Detailed information of g1238.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_012554381.1, hepatitis A virus cellular receptor 1-like [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
B5DF21Protein Smaug homolog 1 OS=Rattus norvegicus OX=10116 GN=Samd4a PE=1 SV=1
Q8CBY1Protein Smaug homolog 1 OS=Mus musculus OX=10090 GN=Samd4a PE=1 SV=2
Q0IHW3Protein Smaug homolog 1 OS=Xenopus tropicalis OX=8364 GN=samd4a PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00106adh_shortshort chain dehydrogenaseDomainInterproscan
PF01404Ephrin_lbdEphrin receptor ligand binding domainDomainInterproscan
PF00536SAM_1SAM domain (Sterile alpha motif)DomainInterproscan
PF17820PDZ_6PDZ domainDomainInterproscan
PF18265Nas2_NNas2 N_terminal domainDomainInterproscan
PF08159NUC153NUC153 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002347FamilyShort-chain dehydrogenase/reductase SDRInterproscan
IPR020904Conserved_siteShort-chain dehydrogenase/reductase, conserved siteInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR001090DomainEphrin receptor ligand binding domainInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR001660DomainSterile alpha motif domainInterproscan
IPR037093Homologous_superfamilySmaug, PHAT domain superfamilyInterproscan
IPR013761Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR050897FamilySMAUG/VTS1 RNA-bindingInterproscan
IPR037634DomainProtein Smaug, SAM domainInterproscan
IPR001478DomainPDZ domainInterproscan
IPR036034Homologous_superfamilyPDZ superfamilyInterproscan
IPR035269Family26S Proteasome non-ATPase regulatory subunit 9Interproscan
IPR041489DomainPDZ domain 6Interproscan
IPR040815DomainNas2, N-terminalInterproscan
IPR012580DomainNUC153Interproscan
IPR039754FamilyPre-rRNA-processing protein Esf1Interproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24322PKSBInterproscan
PTHR12515STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATEDInterproscan
PTHR1265126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 9Interproscan
PTHR12202UNCHARACTERIZEDInterproscan
PTHR38681RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005811Cellular Componentlipid dropletInterproscan
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptorInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0017148Biological Processnegative regulation of translationInterproscan
GO:0030371Molecular Functiontranslation repressor activityInterproscan
GO:0000289Biological Processnuclear-transcribed mRNA poly(A) tail shorteningInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0043488Biological Processregulation of mRNA stabilityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0070682Biological Processproteasome regulatory particle assemblyInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15734SDR16C5; all-trans-retinol dehydrogenase (NAD+)EC:1.1.1.105
Messenger RNA biogenesisko03019deepkoala
Retinol metabolismko00830deepkoala

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