Gene detail

Detailed information of g12384.t1 in Acropora digitifera

Genomic Location: chr6Alt:64809...66175
NR annotation: XP_015774612.1, PREDICTED: cytoplasmic tRNA 2-thiolation protein 2-A-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08B12	Cytoplasmic tRNA 2-thiolation protein 2-A OS=Xenopus laevis OX=8355 GN=ctu2-a PE=2 SV=1
Q32NV1	Cytoplasmic tRNA 2-thiolation protein 2-B OS=Xenopus laevis OX=8355 GN=ctu2-b PE=2 SV=2
Q28ES8	Cytoplasmic tRNA 2-thiolation protein 2 OS=Xenopus tropicalis OX=8364 GN=ctu2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10288 all species →	CTU2	Cytoplasmic tRNA 2-thiolation protein 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR019407 all species →	Family	Cytoplasmic tRNA 2-thiolation protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20882 all species →	CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0002098 all species →	Biological Process	tRNA wobble uridine modification	Interproscan
GO:0034227 all species →	Biological Process	tRNA thio-modification	Interproscan
GO:0002143 all species →	Biological Process	tRNA wobble position uridine thiolation	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016783 all species →	Molecular Function	sulfurtransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14169	CTU2, NCS2; cytoplasmic tRNA 2-thiolation protein 2	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.