Detailed information of g1241.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_055026092.1, egl nine homolog 1 [Misgurnus anguillicaudatus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6PHY8Thioredoxin reductase-like selenoprotein T1b OS=Danio rerio OX=7955 GN=selenot1b PE=2 SV=3
A6QP01Thioredoxin reductase-like selenoprotein T OS=Bos taurus OX=9913 GN=SELENOT PE=2 SV=2
P62341Thioredoxin reductase-like selenoprotein T OS=Homo sapiens OX=9606 GN=SELENOT PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02318FYVE_2FYVE-type zinc fingerFamilyInterproscan
PF18766SWI2_SNF2SWI2/SNF2 ATPaseFamilyInterproscan
PF04313HSDR_NType I restriction enzyme R protein N terminus (HSDR_N)FamilyInterproscan
PF00252Ribosomal_L16Ribosomal protein L16p/L10eDomainInterproscan
PF10262RdxRdx familyFamilyInterproscan
PF01753zf-MYNDMYND fingerDomainInterproscan
PF136402OG-FeII_Oxy_32OG-Fe(II) oxygenase superfamilyDomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF14513DAG_kinase_NDiacylglycerol kinase N-terminusDomainInterproscan
PF01632Ribosomal_L35pRibosomal protein L35FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR010911DomainRab-binding domainInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR051745FamilyIntracellular Transport EffectorInterproscan
IPR041282DomainFYVE-type zinc fingerInterproscan
IPR040980DomainSWI2/SNF2 ATPaseInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR007409DomainRestriction endonuclease, type I, HsdR, N-terminalInterproscan
IPR036920Homologous_superfamilyLarge ribosomal subunit protein uL16 superfamilyInterproscan
IPR047873FamilyLarge ribosomal subunit protein uL16Interproscan
IPR016180DomainLarge ribosomal subunit protein uL16 domainInterproscan
IPR001197FamilyLarge ribosomal subunit protein uL16, eukaryotes/archaeaInterproscan
IPR018255Conserved_siteLarge ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaInterproscan
IPR011893FamilySelenoprotein, Rdx-typeInterproscan
IPR036249Homologous_superfamilyThioredoxin-like superfamilyInterproscan
IPR019389FamilySelenoprotein TInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR040000FamilyNucleolar protein 9Interproscan
IPR001313RepeatPumilio RNA-binding repeatInterproscan
IPR002893DomainZinc finger, MYND-typeInterproscan
IPR051559FamilyHypoxia-inducible factor prolyl hydroxylasesInterproscan
IPR044862DomainProlyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domainInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR050149FamilyCollagen superfamilyInterproscan
IPR038199Homologous_superfamilyDGK type I, N-terminal domain superfamilyInterproscan
IPR029477DomainDiacylglycerol kinase type I, N-terminalInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR001706FamilyLarge ribosomal subunit protein bL35Interproscan
IPR037229Homologous_superfamilyLarge ribosomal subunit protein bL35 superfamilyInterproscan
IPR018265Conserved_siteLarge ribosomal subunit protein bL35, conserved siteInterproscan
IPR021137FamilyLarge ribosomal subunit protein bL35-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14555MYELIN-ASSOCIATED OLIGODENDROCYTIC BASIC PROTEIN MOBP -RELATEDInterproscan
PTHR42927HELICASE SUPERFAMILY 1 AND 2 DOMAIN-CONTAINING PROTEINInterproscan
PTHR1172660S RIBOSOMAL PROTEIN L10Interproscan
PTHR13544SELENOPROTEIN TInterproscan
PTHR13102NUCLEOLAR PROTEIN 9Interproscan
PTHR12907EGL NINE HOMOLOG-RELATEDInterproscan
PTHR24023COLLAGEN ALPHAInterproscan
PTHR3334354S RIBOSOMAL PROTEIN BL35MInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0031267Molecular Functionsmall GTPase bindingInterproscan
GO:0003779Molecular Functionactin bindingInterproscan
GO:0017022Molecular Functionmyosin bindingInterproscan
GO:0030864Cellular Componentcortical actin cytoskeletonInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0004519Molecular Functionendonuclease activityInterproscan
GO:0006304Biological ProcessDNA modificationInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0000027Biological Processribosomal large subunit assemblyInterproscan
GO:0022625Cellular Componentcytosolic large ribosomal subunitInterproscan
GO:0004791Molecular Functionthioredoxin-disulfide reductase (NADPH) activityInterproscan
GO:0005789Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0045454Biological Processcell redox homeostasisInterproscan
GO:0000056Biological Processribosomal small subunit export from nucleusInterproscan
GO:0000447Biological Processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000472Biological Processendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000480Biological Processendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0030686Cellular Component90S preribosomeInterproscan
GO:0030688Cellular Componentpreribosome, small subunit precursorInterproscan
GO:0008198Molecular Functionferrous iron bindingInterproscan
GO:0031543Molecular Functionpeptidyl-proline dioxygenase activityInterproscan
GO:0071456Biological Processcellular response to hypoxiaInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0015934Cellular Componentlarge ribosomal subunitInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01153hsdR; type I restriction enzyme, R subunitEC:3.1.21.3
Amino acid metabolism-deepkoala
Ribosomeko03011deepkoala
Ribosomeko03011deepkoala
Prokaryotic defense systemko02048deepkoala

TOP