Detailed information of g12425.t1 in Acropora digitifera

Genomic Location: chr6Alt:578051...579621
NR annotation: XP_015763727.1, PREDICTED: E3 ubiquitin-protein ligase TRIM71-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Pfam domain
No Pfam domain signature was detected for g12425.t1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR011042
all species →		Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR001258
all species →		RepeatNHL repeatInterproscan
IPR050952
all species →		FamilyTripartite Motif and NHL Repeat Containing E3 LigasesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24104
all species →		E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan
GO:0043161
all species →		Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g12425.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP