Detailed information of g1245.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_169549194.1, putative Ig domain-containing protein [Spirosoma rhododendri]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q922L6Negative elongation factor D OS=Mus musculus OX=10090 GN=Nelfcd PE=1 SV=2
A5GFY4Negative elongation factor D OS=Sus scrofa OX=9823 GN=NELFCD PE=3 SV=1
Q8IXH7Negative elongation factor C/D OS=Homo sapiens OX=9606 GN=NELFCD PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyHMG
Ubiquitin FamilyE3|E3 activity|HECT

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan
PF12804NTP_transf_3MobA-like NTP transferase domainDomainInterproscan
PF13621Cupin_8Cupin-like domainDomainInterproscan
PF08772NOB1_Zn_bindNin one binding (NOB1) Zn-ribbon likeDomainInterproscan
PF04858TH1TH1 proteinFamilyInterproscan
PF00107ADH_zinc_NZinc-binding dehydrogenaseDomainInterproscan
PF08240ADH_NAlcohol dehydrogenase GroES-like domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF21355TRAF-mep_MATHTRAF/meprin, MATH domainDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00837T4_deiodinaseIodothyronine deiodinaseFamilyInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009071DomainHigh mobility group box domainInterproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR050140FamilySRY-related HMG-box transcription factorsInterproscan
IPR029044Homologous_superfamilyNucleotide-diphospho-sugar transferasesInterproscan
IPR013482FamilyMolybdenum cofactor guanylyltransferaseInterproscan
IPR025877DomainMobA-like NTP transferaseInterproscan
IPR041667DomainCupin-like domain 8Interproscan
IPR050910FamilyJMJD6 family arginine demethylases/lysyl-hydroxylasesInterproscan
IPR039907FamilyRNA-binding protein NOB1Interproscan
IPR036283Homologous_superfamilyNOB1 zinc finger-like superfamilyInterproscan
IPR014881DomainNin one binding (NOB1) Zn-ribbon-likeInterproscan
IPR006942FamilyTH1 proteinInterproscan
IPR011032Homologous_superfamilyGroES-like superfamilyInterproscan
IPR013149DomainAlcohol dehydrogenase-like, C-terminalInterproscan
IPR020843DomainPolyketide synthase, enoylreductase domainInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR051603FamilyZinc-Containing ADH Family: Quinone Oxidoreductase/CCCRInterproscan
IPR013154DomainAlcohol dehydrogenase-like, N-terminalInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR008974Homologous_superfamilyTRAF-likeInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR002083DomainMATH/TRAF domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR049342DomainTRAF1-6/MEP1A/B-like, MATH domainInterproscan
IPR000569DomainHECT domainInterproscan
IPR035983Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR000643FamilyIodothyronine deiodinaseInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10270SOX TRANSCRIPTION FACTORInterproscan
PTHR19136MOLYBDENUM COFACTOR GUANYLYLTRANSFERASEInterproscan
PTHR12480ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJDInterproscan
PTHR12814RNA-BINDING PROTEIN NOB1Interproscan
PTHR12144NEGATIVE ELONGATION FACTOR DInterproscan
PTHR44154QUINONE OXIDOREDUCTASEInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR11781IODOTHYRONINE DEIODINASEInterproscan
PTHR11176BOULE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016779Molecular Functionnucleotidyltransferase activityInterproscan
GO:1902758Biological Processbis(molybdopterin guanine dinucleotide)molybdenum biosynthetic processInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0006777Biological ProcessMo-molybdopterin cofactor biosynthetic processInterproscan
GO:0016706Molecular Function2-oxoglutarate-dependent dioxygenase activityInterproscan
GO:0004521Molecular FunctionRNA endonuclease activityInterproscan
GO:0030490Biological Processmaturation of SSU-rRNAInterproscan
GO:0030688Cellular Componentpreribosome, small subunit precursorInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0032021Cellular ComponentNELF complexInterproscan
GO:0034244Biological Processnegative regulation of transcription elongation by RNA polymerase IIInterproscan
GO:0045892Biological Processnegative regulation of DNA-templated transcriptionInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0003730Molecular FunctionmRNA 3'-UTR bindingInterproscan
GO:0003960Molecular FunctionNADPH:quinone reductase activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0070402Molecular FunctionNADPH bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0004800Molecular Functionthyroxine 5'-deiodinase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008494Molecular Functiontranslation activator activityInterproscan
GO:0045948Biological Processpositive regulation of translational initiationInterproscan
GO:0070935Biological Process3'-UTR-mediated mRNA stabilizationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11883NOB1; RNA-binding protein NOB1-G protein-coupled receptorsko04030deepkoala
Proteasomeko03051deepkoala

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