Gene detail

Detailed information of g1246.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_126752527.1, L-carnitine dehydrogenase [Idiomarina piscisalsi]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q8CUW0	L-carnitine dehydrogenase OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831) OX=221109 GN=OB0997 PE=3 SV=1
Q9HTH8	L-carnitine dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=cdhA PE=1 SV=1
Q4V182	L-carnitine dehydrogenase OS=Bacillus cereus (strain ZK / E33L) OX=288681 GN=hbd PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	DUB\|ULP\|ULP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10551	MULE	MULE transposase domain	Domain	Interproscan
PF02902	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan
PF01428	zf-AN1	AN1-like Zinc finger	Family	Interproscan
PF07177	Neuralized	Neuralized	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF05853	BKACE	beta-keto acid cleavage enzyme	Domain	Interproscan
PF00725	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02737	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018289	Domain	MULE transposase domain	Interproscan
IPR003653	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR000058	Domain	Zinc finger, AN1-type	Interproscan
IPR035896	Homologous_superfamily	AN1-like Zinc finger	Interproscan
IPR006573	Domain	Neuralized homology repeat (NHR) domain	Interproscan
IPR037962	Family	Neuralized	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR040052	Family	Splicing factor 45	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR037391	Family	Polyamine-modulated factor 1-binding protein 1	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR008567	Family	Beta-keto acid cleavage enzymes	Interproscan
IPR006108	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR008927	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR006176	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR013328	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12606	SENTRIN/SUMO-SPECIFIC PROTEASE	Interproscan
PTHR14677	ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED	Interproscan
PTHR12429	NEURALIZED	Interproscan
PTHR13288	SPLICING FACTOR 45 SPF45	Interproscan
PTHR18881	POLYAMINE-MODULATED FACTOR 1-BINDING PROTEIN 1-RELATED	Interproscan
PTHR48075	3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016926	Biological Process	protein desumoylation	Interproscan
GO:0016929	Molecular Function	deSUMOylase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000380	Biological Process	alternative mRNA splicing, via spliceosome	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0045292	Biological Process	mRNA cis splicing, via spliceosome	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0007283	Biological Process	spermatogenesis	Interproscan
GO:0097224	Cellular Component	obsolete sperm connecting piece	Interproscan
GO:0043720	Molecular Function	3-keto-5-aminohexanoate cleavage activity	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0070403	Molecular Function	NAD+ binding	Interproscan
GO:0050104	Molecular Function	L-gulonate 3-dehydrogenase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16782	NEURL2; neuralized-like protein 2	-	Mitochondrial biogenesis	ko03029	deepkoala
			Domain-containing proteins not elsewhere classified	ko04990	deepkoala
			Replication and repair	-	deepkoala