Gene detail

Detailed information of g12461.t1 in Montipora capitata

Genomic Location: Sc0000400:184763...201892
NR annotation: XP_029198665.2, suppressor protein SRP40-like isoform X1 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g12461.t1

atggcggccgtaccgagcgagatatacccgcacatctactcatttttgctgcaaaataagtttgttaaaactgcgaaatcattcaagaaagaaacacttctggatttgacctcaaaccatcttgttgactgtgacattgttcagtggtacaatgccttcataagttctaagacacaaatacagaagaaaagaaagcaaacggatgaaagcaatgaaccaaaagcaaaacgccgaaaaaaggaaacatcctcttcagaatcatccatcgcggtggaaacaaaaggaaagaaaacactatcaagggaaaggaaaaaagtaaacgttgaaaagaaaaagggaatcggcaaagtggaaaagtcaggcgaaaataaaccagtgaacaaaaatatcaaggtggaaacgtcggaaaacgatagttctagctcgggccgtgaaaagtcttcgtcacaatcaaattcagaagaagacaaacaagaaagcaaaaaggaaaagtggaaaactaaaaagataaagacagatacctcctgttcaaaccatggtattgtaacatcgaagtttgcagttcagaagtcttcgtgttctgaggaggacaaacaagcaaagaaaaagagacatttaaaagcaaaaaacaaaagtacggaagcagtacctatcagtttaagcacaggccatgataggaaagtctccaaacttggaattaaaaaatggtcatctgaatctagttctgaaacggaggaggaatcgccaaaggaaaagaatgttacaaggtcaacgaaaaagacaaaccgtatcacagaatcatctggtaacatttcgagatccgataataataataagagaagaacaaaattaaatgttataaccttagtcagagctaactcgaaagtcgagaaaaccccgaaagcccatttctcgcgaaaggaggcaagatcaatgaataccaaaggagcatcaaaaggtgacggccacaattcttcatcagaatttagttctaatgaggacgaacaatcgtcagatattaactcaagttcgaaagaggttgaaggtgaagtacaaaattttaagtccgaagaatcacttaaaaacaaaccaacacctttggaagataatgaggcactgtcatcagacgagagttctaactctgacatatctgaatcggattcagaatctgcgatgaccgtaaaaaaatcttctaaattgattagtgataaactaaaagggaagacaaaatctgctgttaaggtaaagaaacaccaaaccgtggattcgtcggagggaaggtcagtcttaagcaaattgacaccaggtacacagacatcgaaaaatagagtagagggatcctcagctgactcaagctcggaagataagaaaccaaactccgatgtgatgaaggcaaagaacattaaaatgcagcaaagcaaaaatatcgagtcctcggatgaaagttccaatcgagagaaatctgaagatgggaaactgtcgaggaatatatcatctacagcttcgatcaagcgaacagcgaagagacaggagaatgtagcccaaaagagatgcagtaatgacagcaatgacgacgatgatggggatgacgatggtgatgatgacatgacttggaaatcccacaaaaagaaaaatattcagcgaaggacttcatctcaagaaacgcatgataacgcatttaatggaaggaaagacgaagagaaaactgtctgtggaattcaagcagaggtaatcccagtttcaaattcaaaggctgctttacgcaatgggggaaatgataagttgaaaacgcccttcaggagagtgagggaagaagaggtgaaagtggatccaagactaaaggataacagttttgaagccaagtttgggtcgcgaggagactggggcgaaaaagcaaatcaagacctgaagtttgtaaaaggaaaatcttttcgacacgaaaaaactaagaaaaaacgagggtgttaccgtggaggacaaataagcacaggcatccattccatcaagtttgacagtgattga

Transcript

g12461.t1

ATGGCGGCCGTACCGAGCGAGATATACCCGCACATCTACTCATTTTTGCTGCAAAATAAGTTTGTTAAAACTGCGAAATCATTCAAGAAAGAAACACTTCTGGATTTGACCTCAAACCATCTTGTTGACTGTGACATTGTTCAGTGGTACAATGCCTTCATAAGTTCTAAGACACAAatacagaagaaaagaaagcaaacgGATGAAAGCAATGAACCAAAAGCAAAACGCCGAAAAAAGGAAACATCCTCTTCAGAATCATCCATCGCGGtggaaacaaaaggaaagaaaacactatcaagggaaaggaaaaaagtaaacgttgaaaagaaaaagggaaTCGGCAAAGTGGAAAAGTCAGGCGAAAATAAACCAGTGAACAAAAATATCAAGGTGGAAACGTCGGAAAACGATAGTTCTAGCTCGGGCCGTGAAAAGTCTTCGTCACAATCAAATTCAGAAGAagacaaacaagaaagcaaaaaGGAAAAGTGGAAAACTAAAAAGATAAAGACAGATACCTCCTGTTCAAACCATGGTATTGTAACATCGAAGTTTGCAGTTCAGAAGTCTTCGTGTTCTGAGGAGGACaaacaagcaaagaaaaagagacatttaaaagcaaaaaacaaaagtacGGAAGCAGTACCTATCAGTTTAAGCACAGGCCATGATAGGAAAGTCTCCAAACTTGGAATTAAAAAATGGTCATCTGAATCTAGTTCTGAAACGGAGGAGGAATCGCCAAAGGAAAAGAATGTTACAAGGTCAACGAAAAAGACAAACCGTATCACAGAATCATCTGGTAACATTTCGAGAtccgataataataataagagaagAACAAAATTAAATGTTATAACCTTAGTCAGAGCTAACTCGAAAGTCGAGAAAACCCCGAAAGCCCATTTCTCGCGAAAGGAGGCAAGATCAATGAATACCAAAGGAGCATCAAAAGGTGACGGCCACAATTCTTCATCAGAATTTAGTTCTAATGAGGACGAACAATCGTCAGATATTAACTCAAGTTCGAAAGAGGTTGAAGGTGAAGTACAAAATTTTAAGTCCGAAGAATCACTTAAAAACAAACCAACACCTTTGGAAGATAATGAGGCACTGTCATCAGACGAGAGTTCTAACTCTGACATATCTGAATCGGATTCAGAATCTGCGATGACCGTAAAAAAATCTTCTAAATTGATTAGTGATAAACTAAAAGGGAAGACAAAATCTGCTGTTAAGGTAAAGAAACACCAAACCGTGGATTCGTCGGAGGGAAGGTCAGTCTTAAGCAAATTGACACCAGGTACACAGACATCGAAAAATAGAGTAGAGGGATCCTCAGCTGACTCAAGCTCGGAAGATAAGAAACCAAACTCCGATGTGATGAAGGCAAAGAACATTAAAATGCAGCAAAGCAAAAATATCGAGTCCTCGGATGAAAGTTCCAATCGAGAGAAATCTGAAGATGGGAAACTGTCGAGGAATATATCATCTACAGCTTCGATCAAGCGAACAGCGAAGAGACAGGAGAATGTAGCCCAAAAGAGATGCAGTAATGACAGCAATGACGACGATGATGGGGATgacgatggtgatgatgacatGACTTGGAAAtcccacaaaaagaaaaatattcagCGAAGGACTTCATCTCAAGAAACGCATGATAACGCATTTAATGGAAGGAAAGACGAAGAGAAAACTGTCTGTGGAATTCAAGCAGAGGTAATCCCAGTTTCAAATTCAAAGGCTGCTTTACGCAATGGGGGAAATGATAAGTTGAAAACGCCCTTCAGGAGAGTGAGGGAAGAAGAGGTGAAAGTGGATCCAAGACTAAAGGATAACAGTTTTGAAGCCAAGTTTGGGTCGCGAGGAGACTGGGGCGAAAAAGCAAATCAAGACCTGAAGTTTGTAAAAGGAAAATCTTTTCGACAcgaaaaaactaagaaaaaacgAGGGTGTTACCGTGGAGGACAAATAAGCACAGGCATCCATTCCATCAAGTTTGACAGTGATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14978	Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens OX=9606 GN=NOLC1 PE=1 SV=2
P41777	Nucleolar and coiled-body phosphoprotein 1 OS=Rattus norvegicus OX=10116 GN=Nolc1 PE=1 SV=2
E9Q5C9	Nucleolar and coiled-body phosphoprotein 1 OS=Mus musculus OX=10090 GN=Nolc1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004438 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05022 all species →	SRP40_C	SRP40, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR039191 all species →	Family	Nopp140-like	Interproscan
IPR007718 all species →	Domain	Srp40, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23216 all species →	NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g12461.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.