Detailed information of g12498.t1 in Acropora digitifera

Genomic Location: chr6Alt:1391783...1398634
NR annotation: XP_015749529.1, PREDICTED: lamina-associated polypeptide 2, isoforms beta/gamma-like isoform X1 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P42166Lamina-associated polypeptide 2, isoform alpha OS=Homo sapiens OX=9606 GN=TMPO PE=1 SV=2
Q62733Lamina-associated polypeptide 2, isoform beta OS=Rattus norvegicus OX=10116 GN=Tmpo PE=1 SV=3
P42167Lamina-associated polypeptide 2, isoforms beta/gamma OS=Homo sapiens OX=9606 GN=TMPO PE=1 SV=2
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08198
all species →		ThymopoietinThymopoietin proteinDomainInterproscan
PF03020
all species →		LEMLEM domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013146
all species →		DomainLEM-like domainInterproscan
IPR051656
all species →		FamilyLEM domain-containingInterproscan
IPR003887
all species →		DomainLEM domainInterproscan
IPR011015
all species →		Homologous_superfamilyLEM/LEM-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12019
all species →		LAMINA-ASSOCIATED POLYPEPTIDE THYMOPOIETINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24031TMPO; lamina-associated polypeptide 2-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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