Detailed information of g1251.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MAL74002.1, F0F1 ATP synthase subunit beta [Rhodospirillaceae bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q2RV18ATP synthase subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=atpD PE=3 SV=1
P05038ATP synthase subunit beta OS=Rhodospirillum rubrum OX=1085 GN=atpD PE=1 SV=3
Q0C100ATP synthase subunit beta OS=Hyphomonas neptunium (strain ATCC 15444) OX=228405 GN=atpD PE=3 SV=1
Gene familySubfamily
Transcription Factors Familyzf-GATA

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13181TPR_8Tetratricopeptide repeatRepeatInterproscan
PF14559TPR_19Tetratricopeptide repeatRepeatInterproscan
PF01299LampLysosome-associated membrane glycoprotein (Lamp)FamilyInterproscan
PF21222Lamp2_2ndLysosome-associated membrane glycoprotein 2, transmembrane segmentDomainInterproscan
PF20700MutatorMutator-like transposaseDomainInterproscan
PF03221HTH_Tnp_Tc5Tc5 transposase DNA-binding domainDomainInterproscan
PF136402OG-FeII_Oxy_32OG-Fe(II) oxygenase superfamilyDomainInterproscan
PF00006ATP-synt_abATP synthase alpha/beta family, nucleotide-binding domainDomainInterproscan
PF00320GATAGATA zinc fingerDomainInterproscan
PF00542Ribosomal_L12Ribosomal protein L7/L12 C-terminal domainDomainInterproscan
PF16320Ribosomal_L12_NRibosomal protein L7/L12 dimerisation domainDomainInterproscan
PF10245MRP-S22Mitochondrial 28S ribosomal protein S22FamilyInterproscan
PF10493Rod_CRough deal protein C-terminal regionFamilyInterproscan
PF00178EtsEts-domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR002000FamilyLysosome-associated membrane glycoproteinInterproscan
IPR048528DomainLysosome-associated membrane glycoprotein 2-like, luminal domainsInterproscan
IPR048524DomainLysosome-associated membrane glycoprotein 2-like, transmembrane domainInterproscan
IPR006600DomainHTH CenpB-type DNA-binding domainInterproscan
IPR049012DomainMutator-like transposase domainInterproscan
IPR050863FamilyCentromere and Transposable Element-Derived ProteinInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR044862DomainProlyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domainInterproscan
IPR050053FamilyATPase alpha/beta chainsInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR020003Active_siteATPase, alpha/beta subunit, nucleotide-binding domain, active siteInterproscan
IPR000194DomainATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainInterproscan
IPR005722FamilyATP synthase, F1 complex, beta subunitInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR024034Homologous_superfamilyATPase, F1/V1 complex, beta/alpha subunit, C-terminalInterproscan
IPR000679DomainZinc finger, GATA-typeInterproscan
IPR013088Homologous_superfamilyZinc finger, NHR/GATA-typeInterproscan
IPR053116FamilyGATA-type Zinc Finger RegulatorInterproscan
IPR000206FamilyLarge ribosomal subunit protein bL12Interproscan
IPR014719Homologous_superfamilyRibosomal protein bL12, C-terminal/adaptor protein ClpS-likeInterproscan
IPR013823DomainLarge ribosomal subunit protein bL12, C-terminalInterproscan
IPR036235Homologous_superfamilyLarge ribosomal subunit protein bL12, oligomerization domain superfamilyInterproscan
IPR008932DomainLarge ribosomal subunit protein bL12, oligomerizationInterproscan
IPR019374FamilySmall ribosomal subunit protein mS22Interproscan
IPR052802FamilyKinetochore-associated RZZ complex proteinInterproscan
IPR019527DomainRZZ complex, subunit KNTC1/ROD, C-terminalInterproscan
IPR000418DomainEts domainInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR046328FamilyETS familyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44186-Interproscan
PTHR11506LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEINInterproscan
PTHR19303TRANSPOSONInterproscan
PTHR35169FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR15184ATP SYNTHASEInterproscan
PTHR47341GATA-TYPE ZINC FINGER PROTEIN 1Interproscan
PTHR4598739S RIBOSOMAL PROTEIN L12Interproscan
PTHR15688KINETOCHORE-ASSOCIATED PROTEIN 1Interproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR11849ETSInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0036064Cellular Componentciliary basal bodyInterproscan
GO:0060271Biological Processcilium assemblyInterproscan
GO:0061512Biological Processprotein localization to ciliumInterproscan
GO:0005765Cellular Componentlysosomal membraneInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0031902Cellular Componentlate endosome membraneInterproscan
GO:0072594Biological Processestablishment of protein localization to organelleInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0045261Cellular Componentproton-transporting ATP synthase complex, catalytic core F(1)Interproscan
GO:0046933Molecular Functionproton-transporting ATP synthase activity, rotational mechanismInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0015986Biological Processproton motive force-driven ATP synthesisInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0007283Biological ProcessspermatogenesisInterproscan
GO:0048599Biological Processoocyte developmentInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005762Cellular Componentmitochondrial large ribosomal subunitInterproscan
GO:0000070Biological Processmitotic sister chromatid segregationInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005828Cellular Componentkinetochore microtubuleInterproscan
GO:0007094Biological Processmitotic spindle assembly checkpoint signalingInterproscan
GO:0031267Molecular Functionsmall GTPase bindingInterproscan
GO:1903394Biological Processprotein localization to kinetochore involved in kinetochore assemblyInterproscan
GO:1990423Cellular ComponentRZZ complexInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0030154Biological Processcell differentiationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23718SON; protein SON-Photosynthesis proteinsko00194deepkoala
Ribosomeko03011deepkoala
Spliceosomeko03041deepkoala

TOP