Detailed information of g1253.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCK5777708.1, cobyric acid synthase [Rhodospirillales bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8G005Cobyric acid synthase OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=cobQ PE=3 SV=1
A9M5X3Cobyric acid synthase OS=Brucella canis (strain ATCC 23365 / NCTC 10854 / RM-666) OX=483179 GN=cobQ PE=3 SV=1
B0CHA6Cobyric acid synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) OX=470137 GN=cobQ PE=3 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00291PALPPyridoxal-phosphate dependent enzymeFamilyInterproscan
PF13359DDE_Tnp_4DDE superfamily endonucleaseDomainInterproscan
PF00059Lectin_CLectin C-type domainDomainInterproscan
PF07685GATase_3CobB/CobQ-like glutamine amidotransferase domainDomainInterproscan
PF13500AAA_26AAA domainDomainInterproscan
PF00163Ribosomal_S4Ribosomal protein S4/S9 N-terminal domainFamilyInterproscan
PF00167FGFFibroblast growth factorDomainInterproscan
PF13912zf-C2H2_6C2H2-type zinc fingerDomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF12874zf-metZinc-finger of C2H2 typeDomainInterproscan
PF01201Ribosomal_S8eRibosomal protein S8eFamilyInterproscan
PF09776Mitoc_L55Mitochondrial ribosomal protein L55FamilyInterproscan
PF11867T1RH-like_CType I restriction enzyme HindI endonuclease subunit-like, C-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036052Homologous_superfamilyTryptophan synthase beta chain-like, PALP domain superfamilyInterproscan
IPR000634Binding_siteSerine/threonine dehydratase, pyridoxal-phosphate-binding siteInterproscan
IPR001926DomainTryptophan synthase beta chain-like, PALP domainInterproscan
IPR027806DomainHarbinger transposase-derived nuclease domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001304DomainC-type lectin-likeInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR016186Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR029062Homologous_superfamilyClass I glutamine amidotransferase-likeInterproscan
IPR011698DomainCobB/CobQ-like glutamine amidotransferaseInterproscan
IPR004459FamilyCobyric acid synthase CobQInterproscan
IPR033949DomainCobyric acid synthase, glutamine amidotransferase type 1Interproscan
IPR001912DomainSmall ribosomal subunit protein uS4, N-terminalInterproscan
IPR022801FamilySmall ribosomal subunit protein uS4Interproscan
IPR002209FamilyFibroblast growth factor familyInterproscan
IPR008996Homologous_superfamilyCytokine IL1/FGFInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR039411FamilyRibosomal biogenesis NSA2 familyInterproscan
IPR022309FamilyRibosomal protein eS8/ribosomal biogenesis NSA2Interproscan
IPR044884Homologous_superfamilyLarge ribosomal subunit protein mL55 superfamilyInterproscan
IPR018615FamilyLarge ribosomal subunit protein mL55Interproscan
IPR021810DomainType I restriction enzyme HindI endonuclease subunit-like, C-terminalInterproscan
IPR051268FamilyType I restriction enzyme R subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43050SERINE / THREONINE RACEMASE FAMILY MEMBERInterproscan
PTHR22930UNCHARACTERIZEDInterproscan
PTHR23389CHROMOSOME TRANSMISSION FIDELITY FACTOR 18Interproscan
PTHR21343DETHIOBIOTIN SYNTHETASEInterproscan
PTHR1183130S 40S RIBOSOMAL PROTEINInterproscan
PTHR11486FIBROBLAST GROWTH FACTORInterproscan
PTHR24394ZINC FINGER PROTEINInterproscan
PTHR12642RIBOSOME BIOGENESIS PROTEIN NSA2 HOMOLOGInterproscan
PTHR3409539S RIBOSOMAL PROTEIN L55, MITOCHONDRIALInterproscan
PTHR30195TYPE I SITE-SPECIFIC DEOXYRIBONUCLEASE PROTEIN SUBUNIT M AND RInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006520Biological Processamino acid metabolic processInterproscan
GO:0030170Molecular Functionpyridoxal phosphate bindingInterproscan
GO:0000287Molecular Functionmagnesium ion bindingInterproscan
GO:0003941Molecular FunctionL-serine ammonia-lyase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0018114Molecular Functionthreonine racemase activityInterproscan
GO:0030378Molecular Functionserine racemase activityInterproscan
GO:0070179Biological ProcessD-serine biosynthetic processInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0061860Molecular FunctionDNA clamp unloader activityInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0009236Biological Processcobalamin biosynthetic processInterproscan
GO:0019843Molecular FunctionrRNA bindingInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0030515Molecular FunctionsnoRNA bindingInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0034457Cellular ComponentMpp10 complexInterproscan
GO:0042274Biological Processribosomal small subunit biogenesisInterproscan
GO:0008083Molecular Functiongrowth factor activityInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0000460Biological Processmaturation of 5.8S rRNAInterproscan
GO:0000470Biological Processmaturation of LSU-rRNAInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0030687Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005762Cellular Componentmitochondrial large ribosomal subunitInterproscan
GO:0006412Biological ProcesstranslationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12235SRR; serine racemaseEC:5.1.1.18
Porphyrin metabolismko00860deepkoala
Ribosome biogenesisko03009deepkoala
D-Amino acid metabolismko00470deepkoala

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