Detailed information of g1254.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_119679292.1, RsmB/NOP family class I SAM-dependent RNA methyltransferase [Indioceanicola profundi]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9I7A9Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rsmB PE=3 SV=1
Q87KD3Ribosomal RNA small subunit methyltransferase B OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=rsmB PE=3 SV=1
Q88B41Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=rsmB PE=3 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01266DAOFAD dependent oxidoreductaseDomainInterproscan
PF00595PDZPDZ domainDomainInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF00612IQIQ calmodulin-binding motifMotifInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF01189Methyltr_RsmB-F16S rRNA methyltransferase RsmB/FFamilyInterproscan
PF01029NusBNusB familyDomainInterproscan
PF01116F_bP_aldolaseFructose-bisphosphate aldolase class-IIDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023209FamilyD-amino-acid oxidaseInterproscan
IPR006076DomainFAD dependent oxidoreductaseInterproscan
IPR006181Conserved_siteD-amino acid oxidase, conserved siteInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR001478DomainPDZ domainInterproscan
IPR036034Homologous_superfamilyPDZ superfamilyInterproscan
IPR036892Homologous_superfamilyL27 domain superfamilyInterproscan
IPR051342FamilyPDZ domain-containing scaffold proteinInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR024881FamilyT-cell immunomodulatory proteinInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR000048Binding_siteIQ motif, EF-hand binding siteInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR042086Homologous_superfamilyMethyltransferase, alpha-helical capping domainInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR050329FamilyGLI C2H2-type zinc-fingerInterproscan
IPR035926Homologous_superfamilyNusB-like superfamilyInterproscan
IPR049560DomainSAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreInterproscan
IPR023267FamilyRNA (C5-cytosine) methyltransferaseInterproscan
IPR006027DomainNusB/RsmB/TIM44Interproscan
IPR001678DomainSAM-dependent methyltransferase RsmB-F/NOP2-type domainInterproscan
IPR013785Homologous_superfamilyAldolase-type TIM barrelInterproscan
IPR000771FamilyFructose-bisphosphate aldolase, class-IIInterproscan
IPR006411FamilyFructose-bisphosphate aldolase, class II, yeast/E. coli subtypeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11530D-AMINO ACID OXIDASEInterproscan
PTHR19964MULTIPLE PDZ DOMAIN PROTEINInterproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan
PTHR13412T-CELL IMMUNOMODULATORY PROTEIN HOMOLOGInterproscan
PTHR24126ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATEDInterproscan
PTHR19818ZINC FINGER PROTEIN ZIC AND GLIInterproscan
PTHR22807NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAININGInterproscan
PTHR30559FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS 2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003884Molecular FunctionD-amino-acid oxidase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0019478Biological ProcessD-amino acid catabolic processInterproscan
GO:0046416Biological ProcessD-amino acid metabolic processInterproscan
GO:0071949Molecular FunctionFAD bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0001510Biological ProcessRNA methylationInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0016832Molecular Functionaldehyde-lyase activityInterproscan
GO:0004332Molecular Functionfructose-bisphosphate aldolase activityInterproscan
GO:0006096Biological Processglycolytic processInterproscan
GO:0005829Cellular ComponentcytosolInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01624FBA, fbaA; fructose-bisphosphate aldolase, class IIEC:4.1.2.13
Ribosome biogenesisko03009deepkoala
Cilium and associated proteinsko03037deepkoala
Methane metabolismko00680deepkoala

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