Detailed information of g1256.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBI1262107.1, 50S ribosomal protein L20 [Hyphomicrobiales bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
A7HPK9Large ribosomal subunit protein bL20 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=rplT PE=3 SV=1
A5E8L8Large ribosomal subunit protein bL20 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) OX=288000 GN=rplT PE=3 SV=1
Q2J454Large ribosomal subunit protein bL20 OS=Rhodopseudomonas palustris (strain HaA2) OX=316058 GN=rplT PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilybHLH

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07527Hairy_orangeHairy OrangeDomainInterproscan
PF00010HLHHelix-loop-helix DNA-binding domainDomainInterproscan
PF015916PF2K6-phosphofructo-2-kinaseDomainInterproscan
PF00453Ribosomal_L20Ribosomal protein L20FamilyInterproscan
PF00800PDTPrephenate dehydrataseFamilyInterproscan
PF00206Lyase_1LyaseDomainInterproscan
PF08328ASL_CAdenylosuccinate lyase C-terminalFamilyInterproscan
PF000017tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan
PF00441Acyl-CoA_dh_1Acyl-CoA dehydrogenase, C-terminal domainDomainInterproscan
PF02770Acyl-CoA_dh_MAcyl-CoA dehydrogenase, middle domainDomainInterproscan
PF02771Acyl-CoA_dh_NAcyl-CoA dehydrogenase, N-terminal domainDomainInterproscan
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003650DomainOrange domainInterproscan
IPR003094FamilyFructose-2,6-bisphosphataseInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR013079Domain6-phosphofructo-2-kinaseInterproscan
IPR049946Conserved_siteLarge ribosomal subunit protein bL20, conserved siteInterproscan
IPR005813FamilyLarge ribosomal subunit protein bL20Interproscan
IPR035566Homologous_superfamilyRibosomal protein bL20, C-terminalInterproscan
IPR026748FamilyClarinInterproscan
IPR008948Homologous_superfamilyL-Aspartase-likeInterproscan
IPR001086DomainPrephenate dehydrataseInterproscan
IPR020557Conserved_siteFumarate lyase, conserved siteInterproscan
IPR047136FamilyAdenylosuccinate lyase PurB, bacteriaInterproscan
IPR022761DomainFumarate lyase, N-terminalInterproscan
IPR013539DomainAdenylosuccinate lyase PurB, C-terminalInterproscan
IPR004769FamilyAdenylosuccinate lyaseInterproscan
IPR024083Homologous_superfamilyFumarase/histidase, N-terminalInterproscan
IPR000362FamilyFumarate lyase familyInterproscan
IPR000276FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR037069Homologous_superfamilyAcyl-CoA dehydrogenase/oxidase, N-terminal domain superfamilyInterproscan
IPR009075DomainAcyl-CoA dehydrogenase/oxidase, C-terminalInterproscan
IPR009100Homologous_superfamilyAcyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamilyInterproscan
IPR006091DomainAcyl-CoA oxidase/dehydrogenase, middle domainInterproscan
IPR036250Homologous_superfamilyAcyl-CoA dehydrogenase-like, C-terminalInterproscan
IPR013786DomainAcyl-CoA dehydrogenase/oxidase, N-terminalInterproscan
IPR046373Homologous_superfamilyAcyl-CoA oxidase/dehydrogenase, middle domain superfamilyInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR031643DomainDomain of unknown function DUF4708Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR106066-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASEInterproscan
PTHR1098639S RIBOSOMAL PROTEIN L20Interproscan
PTHR31548CLARINInterproscan
PTHR43411ADENYLOSUCCINATE LYASEInterproscan
PTHR24238G-PROTEIN COUPLED RECEPTORInterproscan
PTHR43884ACYL-COA DEHYDROGENASEInterproscan
PTHR33395TRANSCRIPTASE, PUTATIVE-RELATED-RELATEDInterproscan
PTHR28495HYPOTHETICAL PROTEIN LOC100359752Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006003Biological Processfructose 2,6-bisphosphate metabolic processInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0003873Molecular Function6-phosphofructo-2-kinase activityInterproscan
GO:0006000Biological Processfructose metabolic processInterproscan
GO:0004331Molecular Functionfructose-2,6-bisphosphate 2-phosphatase activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0019843Molecular FunctionrRNA bindingInterproscan
GO:0000027Biological Processribosomal large subunit assemblyInterproscan
GO:0022625Cellular Componentcytosolic large ribosomal subunitInterproscan
GO:0004664Molecular Functionprephenate dehydratase activityInterproscan
GO:0009094Biological ProcessL-phenylalanine biosynthetic processInterproscan
GO:0004018Molecular FunctionN6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activityInterproscan
GO:0006188Biological ProcessIMP biosynthetic processInterproscan
GO:0009152Biological Processpurine ribonucleotide biosynthetic processInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007218Biological Processneuropeptide signaling pathwayInterproscan
GO:0008188Molecular Functionneuropeptide receptor activityInterproscan
GO:0016627Molecular Functionoxidoreductase activity, acting on the CH-CH group of donorsInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0000062Molecular Functionfatty-acyl-CoA bindingInterproscan
GO:0003995Molecular Functionacyl-CoA dehydrogenase activityInterproscan
GO:0017099Molecular Functionvery-long-chain fatty acyl-CoA dehydrogenase activityInterproscan
GO:0007508Biological Processlarval heart developmentInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0061343Biological Processcell adhesion involved in heart morphogenesisInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23841CLRN; clarin-Ribosomeko03011deepkoala
Cilium and associated proteinsko03037deepkoala

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