Gene detail

Detailed information of g1260.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MAL76874.1, 30S ribosomal protein S21 [Rhodospirillaceae bacterium]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q2ND78	Small ribosomal subunit protein bS21 OS=Erythrobacter litoralis (strain HTCC2594) OX=314225 GN=rpsU PE=3 SV=1
Q0BUX3	Small ribosomal subunit protein bS21 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) OX=391165 GN=rpsU PE=3 SV=2
Q2G4F2	Small ribosomal subunit protein bS21 OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=rpsU PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01165	Ribosomal_S21	Ribosomal protein S21	Family	Interproscan
PF03492	Methyltransf_7	SAM dependent carboxyl methyltransferase	Family	Interproscan
PF14291	DUF4371	Domain of unknown function (DUF4371)	Family	Interproscan
PF00412	LIM	LIM domain	Domain	Interproscan
PF00520	Ion_trans	Ion transport protein	Family	Interproscan
PF08412	Ion_trans_N	Ion transport protein N-terminal	Family	Interproscan
PF13041	PPR_2	PPR repeat family	Repeat	Interproscan
PF02141	DENN	DENN (AEX-3) domain	Family	Interproscan
PF03455	dDENN	dDENN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001911	Family	Small ribosomal subunit protein bS21	Interproscan
IPR018278	Conserved_site	Small ribosomal subunit protein bS21, conserved site	Interproscan
IPR038380	Homologous_superfamily	Small ribosomal subunit protein bS21 superfamily	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR005299	Family	SAM dependent carboxyl methyltransferase	Interproscan
IPR042086	Homologous_superfamily	Methyltransferase, alpha-helical capping domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR025398	Domain	Domain of unknown function DUF4371	Interproscan
IPR001781	Domain	Zinc finger, LIM-type	Interproscan
IPR005821	Domain	Ion transport domain	Interproscan
IPR013621	Domain	Ion transport N-terminal	Interproscan
IPR051413	Family	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel	Interproscan
IPR002885	Repeat	Pentatricopeptide repeat	Interproscan
IPR051696	Family	DENN Domain-Containing GEFs	Interproscan
IPR037516	Domain	Tripartite DENN domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR001194	Domain	cDENN domain	Interproscan
IPR005112	Domain	dDENN domain	Interproscan
IPR043153	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	Interproscan
PTHR31009	S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN	Interproscan
PTHR45749	-	Interproscan
PTHR24207	ZYX102 PROTEIN	Interproscan
PTHR46601	ULP_PROTEASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR22955	RETROTRANSPOSON	Interproscan
PTHR45689	I[[H]] CHANNEL, ISOFORM E	Interproscan
PTHR12296	DENN DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0008757	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan
GO:0032259	Biological Process	methylation	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0003254	Biological Process	regulation of membrane depolarization	Interproscan
GO:0005249	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0035725	Biological Process	sodium ion transmembrane transport	Interproscan
GO:0071805	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0098855	Cellular Component	HCN channel complex	Interproscan
GO:0031410	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032483	Biological Process	regulation of Rab protein signal transduction	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16676	LPP; lipoma-prefererred partner	-	Ribosome	ko03011	deepkoala
K16676	LPP; lipoma-prefererred partner	-	Hippo signaling pathway - fly	ko04391	deepkoala