Detailed information of g1262.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_127767742.1, NAD(P)H-dependent oxidoreductase subunit E [Hwanghaeella grinnelliae]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P56913NADH-quinone oxidoreductase subunit F 2 OS=Rhizobium meliloti (strain 1021) OX=266834 GN=nuoF2 PE=3 SV=2
O52682Bifurcating [FeFe] hydrogenase beta subunit OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=hydB PE=1 SV=1
Q68XY3NADH-quinone oxidoreductase subunit F OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=nuoF PE=3 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyDUB|USP|USP
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05380Peptidase_A17Pao retrotransposon peptidase FamilyInterproscan
PF13843DDE_Tnp_1_7Transposase IS4DomainInterproscan
PF012572Fe-2S_thioredxThioredoxin-like [2Fe-2S] ferredoxinFamilyInterproscan
PF10589NADH_4Fe-4SNADH-ubiquinone oxidoreductase-F iron-sulfur binding regionDomainInterproscan
PF10531SLBBSLBB domainDomainInterproscan
PF01512Complex1_51KRespiratory-chain NADH dehydrogenase 51 Kd subunitFamilyInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF00443UCHUbiquitin carboxyl-terminal hydrolaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008042FamilyRetrotransposon, PaoInterproscan
IPR029526DomainPiggyBac transposable element-derived proteinInterproscan
IPR001949Conserved_siteNADH:ubiquinone oxidoreductase, 51kDa subunit, conserved siteInterproscan
IPR019575DomainNADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainInterproscan
IPR037225Homologous_superfamilyNADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamilyInterproscan
IPR037207Homologous_superfamilyNADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamilyInterproscan
IPR019554DomainSoluble ligand binding domainInterproscan
IPR011538DomainNADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domainInterproscan
IPR041921Homologous_superfamilyNADH-quinone oxidoreductase subunit E, N-terminalInterproscan
IPR036249Homologous_superfamilyThioredoxin-like superfamilyInterproscan
IPR052208FamilyDmX-like/RAVE complex componentInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR050185FamilyUbiquitin carboxyl-terminal hydrolaseInterproscan
IPR018200Conserved_siteUbiquitin specific protease, conserved siteInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR028889DomainUbiquitin specific protease domainInterproscan
IPR001394DomainPeptidase C19, ubiquitin carboxyl-terminal hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46599PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4Interproscan
PTHR47272DDE_TNP_1_7 DOMAIN-CONTAINING PROTEINInterproscan
PTHR46704CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR43578NADH-QUINONE OXIDOREDUCTASE SUBUNIT FInterproscan
PTHR13950RABCONNECTIN-RELATEDInterproscan
PTHR21646UBIQUITIN CARBOXYL-TERMINAL HYDROLASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008137Molecular FunctionNADH dehydrogenase (ubiquinone) activityInterproscan
GO:0010181Molecular FunctionFMN bindingInterproscan
GO:0051539Molecular Function4 iron, 4 sulfur cluster bindingInterproscan
GO:0007035Biological Processvacuolar acidificationInterproscan
GO:0043291Cellular ComponentRAVE complexInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004843Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0016579Biological Processprotein deubiquitinationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11852USP31; ubiquitin carboxyl-terminal hydrolase 31EC:3.4.19.12
Methane metabolismko00680deepkoala
Ubiquitin systemko04121deepkoala

TOP