Detailed information of g1263.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_068144960.1, MULTISPECIES: RNA polymerase-binding protein DksA [Kordiimonas]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P0CAU3RNA polymerase-binding transcription factor DksA OS=Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) OX=190650 GN=dksA PE=3 SV=1
B8H0C0RNA polymerase-binding transcription factor DksA OS=Caulobacter vibrioides (strain NA1000 / CB15N) OX=565050 GN=dksA PE=3 SV=1
P43758RNA polymerase-binding transcription factor DksA OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=dksA PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF12234Rav1p_CRAVE protein 1 C terminalFamilyInterproscan
PF21157DksA_CCDnaK suppressor protein DksA, coiled-coil domainCoiled-coilInterproscan
PF01258zf-dskA_traRProkaryotic dksA/traR C4-type zinc fingerFamilyInterproscan
PF03142Chitin_synth_2Chitin synthaseFamilyInterproscan
PF03184DDE_1DDE superfamily endonucleaseFamilyInterproscan
PF00448SRP54SRP54-type protein, GTPase domainDomainInterproscan
PF02881SRP54_NSRP54-type protein, helical bundle domainDomainInterproscan
PF02978SRP_SPBSignal peptide binding domainDomainInterproscan
PF00013KH_1KH domainDomainInterproscan
PF02827PKIcAMP-dependent protein kinase inhibitorFamilyInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR052208FamilyDmX-like/RAVE complex componentInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR022033DomainRAVE complex protein Rav1 C-terminalInterproscan
IPR048489DomainDnaK suppressor protein DksA, N-terminal domainInterproscan
IPR000962DomainZinc finger, DksA/TraR C4-typeInterproscan
IPR012784FamilyRNA polymerase-binding transcription factor DksAInterproscan
IPR020458Conserved_siteZinc finger, DksA/TraR C4-type conserved siteInterproscan
IPR037187Homologous_superfamilyDksA, N-terminal domain superfamilyInterproscan
IPR004835FamilyChitin synthaseInterproscan
IPR029044Homologous_superfamilyNucleotide-diphospho-sugar transferasesInterproscan
IPR004875DomainDDE superfamily endonuclease domainInterproscan
IPR000897DomainSignal recognition particle, SRP54 subunit, GTPase domainInterproscan
IPR013822DomainSignal recognition particle SRP54, helical bundleInterproscan
IPR022941FamilySignal recognition particle, SRP54 subunitInterproscan
IPR006325FamilySignal recognition particle, SRP54 subunit, eukaryoticInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036891Homologous_superfamilySignal recognition particle, SRP54 subunit, M-domain superfamilyInterproscan
IPR004125DomainSignal recognition particle, SRP54 subunit, M-domainInterproscan
IPR042101Homologous_superfamilySignal recognition particle SRP54, N-terminal domain superfamilyInterproscan
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR047276DomainRNA-binding protein Nova-1/2, type I K Homology domain 2Interproscan
IPR004087DomainK Homology domainInterproscan
IPR004088DomainK Homology domain, type 1Interproscan
IPR047275DomainRNA-binding protein Nova-1/2, type I K Homology domain 1Interproscan
IPR004171FamilycAMP-dependent protein kinase inhibitorInterproscan
IPR050863FamilyCentromere and Transposable Element-Derived ProteinInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR051177FamilyCatalytically Inactive Kinase-Related ProteinInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR049508DomainSerine/threonine-protein kinase MARK 1-4, catalytic domainInterproscan
IPR015940DomainUbiquitin-associated domainInterproscan
IPR017441Binding_siteProtein kinase, ATP binding siteInterproscan
IPR008271Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR028375Homologous_superfamilyKA1 domain/Ssp2, C-terminalInterproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13950RABCONNECTIN-RELATEDInterproscan
PTHR33823RNA POLYMERASE-BINDING TRANSCRIPTION FACTOR DKSA-RELATEDInterproscan
PTHR22914CHITIN SYNTHASEInterproscan
PTHR11564SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54Interproscan
PTHR10288KH DOMAIN CONTAINING RNA BINDING PROTEINInterproscan
PTHR19303TRANSPOSONInterproscan
PTHR12984SCY1-RELATED S/T PROTEIN KINASE-LIKEInterproscan
PTHR24346MAP/MICROTUBULE AFFINITY-REGULATING KINASEInterproscan
PTHR24246OLFACTORY RECEPTOR AND ADENOSINE RECEPTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0007035Biological Processvacuolar acidificationInterproscan
GO:0043291Cellular ComponentRAVE complexInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004100Molecular Functionchitin synthase activityInterproscan
GO:0006038Biological Processobsolete cell wall chitin biosynthetic processInterproscan
GO:0016758Molecular Functionhexosyltransferase activityInterproscan
GO:0030428Cellular Componentcell septumInterproscan
GO:0071944Cellular Componentcell peripheryInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0006614Biological ProcessSRP-dependent cotranslational protein targeting to membraneInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005786Cellular Componentsignal recognition particle, endoplasmic reticulum targetingInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006616Biological ProcessSRP-dependent cotranslational protein targeting to membrane, translocationInterproscan
GO:0008312Molecular Function7S RNA bindingInterproscan
GO:0030942Molecular Functionendoplasmic reticulum signal peptide bindingInterproscan
GO:0048500Cellular Componentsignal recognition particleInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0000381Biological Processregulation of alternative mRNA splicing, via spliceosomeInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0004862Molecular FunctioncAMP-dependent protein kinase inhibitor activityInterproscan
GO:0006469Biological Processnegative regulation of protein kinase activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0000226Biological Processmicrotubule cytoskeleton organizationInterproscan
GO:0035556Biological Processintracellular signal transductionInterproscan
GO:0050321Molecular Functiontau-protein kinase activityInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08798MARK; MAP/microtubule affinity-regulating kinaseEC:2.7.11.1
Ribosome biogenesisko03009deepkoala
Secretion systemko02044deepkoala
Protein kinasesko01001deepkoala
Cytoskeleton proteinsko04812deepkoala

TOP