Detailed information of g12685.t1 in Montipora capitata

Genomic Location: Sc0000415:47229...63538
NR annotation: XP_029207940.2, ultraviolet-B receptor UVR8-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q947D2PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRAF1 PE=1 SV=1
Q9FN03Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1
O95714E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens OX=9606 GN=HERC2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004818 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01363
all species →		FYVEFYVE zinc fingerDomainInterproscan
PF00415
all species →		RCC1Regulator of chromosome condensation (RCC1) repeatRepeatInterproscan
PF16457
all species →		PH_12Pleckstrin homology domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000306
all species →		DomainFYVE zinc fingerInterproscan
IPR000408
all species →		RepeatRegulator of chromosome condensation, RCC1Interproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR009091
all species →		Homologous_superfamilyRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIInterproscan
IPR017455
all species →		DomainZinc finger, FYVE-relatedInterproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR051210
all species →		FamilyUbiquitin ligases and GEF domain-containing proteinInterproscan
IPR001849
all species →		DomainPleckstrin homology domainInterproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22870
all species →		REGULATOR OF CHROMOSOME CONDENSATIONInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g12685.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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