Gene detail

Detailed information of g12744.t1 in Acropora digitifera

Genomic Location: chr6Alt:4498281...4504563
NR annotation: XP_015761612.1, PREDICTED: uncharacterized protein LOC107340750 isoform X1 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g12744.t1

ATGATTTTGTCCTCTCATGTCCCAAGCGCTGCGCCGTTTATTAATGAATTGCCGTCAAAGATGCCAGAATCGTCTTGGAATGACATGAGTCCACCTAAAAATGGAAGCCATTTTTTGAATGAGCAGAGAAAAGGTTTCAAGCCAGTTGCTGTTGTTAATGGCTGCGCTAAAGAAAGAACTTCCACACCATTCAATGGATTCCACTACCAAGAAACAATTAAGGCAATACCTGAGAAAACTGTTGGGCACGGAAGGCCAAGATATCATTGGCACTCACCTCGAGTCTGCTCAGCTACCGAGTCTGCCCCTGGCGGTCATGGTCAGGGTGAAAGAATGTATGAACAGATTGCTGGAAGAGTGAGGCCCGGACTCCAAGGAAGATCCAAAGAAGAGGTTAACGGGTTCAACTTTGCGCCGATGGAGGCAGCGAATTATGAGGACTCACTGGTGGTGCAACAGAATGGAAACTGCACTTCTGGAACGACACGTGACTTGTTCTTACGACACCGAGGACCAGATGTTCCAGAATTTGACACTCGAAGTGGACACTTCAATGGAACAGCCGATCAGCATCAATCTCGCCGTCGTTTCTACAGTGAGGATGGAACTTTTCATGATTTCGGAAAAGTGAACCTTCGAGAGGAGATGCCAGTTGAAGACACTGGCGTGACTAAACTACAATTTGAGCTGTCAAAACGATTCGAATTCCCTCGAATGAATGGTTGGGGTCATTGTGCTCGTACAGTATCAGAAGATGTACCGCTCGACCGAGGAGAGAAGAGGATTTTCGAACTGTTGAGAAACAATGGCCCGTTGGTAGCTGGAGACATAGCCACGCTGGGAGTTGATACAGAAGACCGTGTGAATCACTGTCTGTTTACTCTGTACAAGAGAGGGCTTGTTGAGATTAGCAGATCCAGCCCACCTCTCTATGCTGTTAGTGATTCGTTCCTGCACAAGGGTCCCAGAAGTCCAGGGGTCATTGGCGCAGAGAGAAAGCAGGAAACGTTAATCCGAGGACGAAGCCACAGCGACGACTGGTGTGAACGGCAAAGGCGACATTCGTATGGCTCTCGTGAAAGTAGGCAAAGACAGGAATCTCGAGTAGTGGACAACGCGAGAGCGTCGGCCAGATCCAATGGACTACACGGTGCCATTCCAAGCGAACCGCGAATCTCGCCCTATTTCTGCAAGTACTGTAAACTGCCGTTTCAATCCGCTGCACAATTCGAGGAACACCTCCAAAGCACAAAACATCAAAACAAATATGCAAAGTACAATGCCGTGCCCTACAGGAAGTTTTGCGAATATTGCAAGGTGCATCTGAATTCGGAGTCGCAAGCCAAAGAACATTTCAACAGTGGAAGACACGAGCAGACAGTTGCAAAGTCACAGAAGGCACCTCTCAAACAGCACCTGCCATTGGTCTCGTTCACCCAGGAGCCCTACTTGGAGACCACGACCAGAACAGAGCCATACTCTTACCAAAGGGAATTGTATGGCAAGGCAATGACGACAAACTCTGTGTGTTTCCTACCAACAGGTAGTGGGAAAACTCTGGTCGCAGCTTTGGTAATTGCTCATATGCTTAAGCTCAATCCATGTCGCCAGGTGGTGTTTCTCGTCGATCGAGTCTTACTGGTTCTCCAACAGAGTGACTATCTGAGAAGCGAGTTGTCACATATCCGAGTTGCCGATGAAGGGAGCTCCAATTCTTTCAACGGCACAAGACCCATTCGCATCGGCGCTGTGTGCGGTGAAATGAGAAAACTGGAAGGAAATTCTCGTATCTATGAGCAAGATGTGTTGATTATCACAGCTGACTGTTATAGAAATCATCTCAACAACGGAACGCTTCGTTTCGAAGACGTTTCGCTGATCGTCCTTGACGAAGCCCATCATTGCAACAAAGATCATCCATACAACGTGATCATACGGGACTTTTATCTTCGAGAGGACGATCTTCTCGGTCATCGCCCTAAGGTCCTGGGCCTGACTGCATCGCCAGCTGGCGAGCTTTCGTTGGACAAGACAACAAAGCGGTTGCAACGTCTCTTGGGAAATCTGGATGATGCGAGGCTCTTAAACGTGTCACGCAGTATCCAGAAACTGGATGAAAAGACAAATAAGGCGCCTCCAGAGTGCGTGACAGCCTTGTGCACACCACCGGAGGAAGAGCTAAGGGATGCCTTGATGGAATACGTGACCAAAGCCTTCAACTTGACAGTTCGTTTGAGTGAGATGAAGGACTACAAAGATATTTTCCAGCCCTCGTCAGGCGGGATGTTCAGCATAGACGACGTCCACCCCGTTCTTCGTGTCACGGACAAAATAATTCTCTCACGTCCAGACTCTAATGCTTTGAGTGCCCTCCTACATTTCCAGATCATTTGTGAAGCCATCTGTGCGCTGCAGGAGTGTGGAAGACAAGTAGCACTGAACCAAATGGCTGAGCTTGCAGGGGAGGGATGCCCTCATGGGTTCCAATGGGCAGAAAGCATGGGCTTACCTTCCAGCCAACTCTGTTCACATTTTGGTCAATACTTCTGTCCAGGTTTGCTGTGGAGTCCCAACCTGGCTAGAACTGCATCTGCCGCAGATCAACTTGTTGAGTTCTTATCAAAAGAGACCTGGCACGGAGTGTGTGGTCAAAGAGCTGCTTGGGTCCTCGTTTTGGTCACTCGAAAGCGAACAGCCAGCCATCTCGCAAACTACTTGTCGAGCTCCCCCCAACTTCAGGCTCGTGGAATAACGAGCGTTTGCTTGGAAGATCAAGGAAGCGGCCCGGGTGAGCAAGATTTGGTTGCTTTTGAGCCAGGAGAAGTACTCCAGCGAATTTGTGATGGATTTGTTCAAATTGTTGTTTCTACGAGCGCCCCTGAGGATAGTCTCGGTTTGCCAAGTTGCCAGTTGGTGGTCCAAATGAATCCTCCCAGCTCTACTCAGGCTCTCACGCAAATACGCGCCCGAAGCCAGGCTGCAAGGTTTGTGTGCATCTCCAGAAACGAGGAACAGGCCAAAAAGATTGAAGATTTGTTACGACGAGAAGAGAACATGAAACGTGCTGTAAGAATCCTAAACGGGTTGTAG

Transcript

chr6Alt.g12744.t1

GTATATTGCACGTGCATTTTTCATCTTTTGACATATTGGAGACGTTCTCGTTCTTTCTATGACGTGAAATGACCTGTTTTGCCGTTATGTGGACGACGTAAGCATATGATTTTGTCCTCTCATGTCCCAAGCGCTGCGCCGTTTATTAATGAATTGCCGTCAAAGATGCCAGAATCGTCTTGGAATGACATGAGTCCACCTAAAAATGGAAGCCATTTTTTGAATGAGCAGAGAAAAGGTTTCAAGCCAGTTGCTGTTGTTAATGGCTGCGCTAAAGAAAGAACTTCCACACCATTCAATGGATTCCACTACCAAGAAACAATTAAGGCAATACCTGAGAAAACTGTTGGGCACGGAAGGCCAAGATATCATTGGCACTCACCTCGAGTCTGCTCAGCTACCGAGTCTGCCCCTGGCGGTCATGGTCAGGGTGAAAGAATGTATGAACAGATTGCTGGAAGAGTGAGGCCCGGACTCCAAGGAAGATCCAAAGAAGAGGTTAACGGGTTCAACTTTGCGCCGATGGAGGCAGCGAATTATGAGGACTCACTGGTGGTGCAACAGAATGGAAACTGCACTTCTGGAACGACACGTGACTTGTTCTTACGACACCGAGGACCAGATGTTCCAGAATTTGACACTCGAAGTGGACACTTCAATGGAACAGCCGATCAGCATCAATCTCGCCGTCGTTTCTACAGTGAGGATGGAACTTTTCATGATTTCGGAAAAGTGAACCTTCGAGAGGAGATGCCAGTTGAAGACACTGGCGTGACTAAACTACAATTTGAGCTGTCAAAACGATTCGAATTCCCTCGAATGAATGGTTGGGGTCATTGTGCTCGTACAGTATCAGAAGATGTACCGCTCGACCGAGGAGAGAAGAGGATTTTCGAACTGTTGAGAAACAATGGCCCGTTGGTAGCTGGAGACATAGCCACGCTGGGAGTTGATACAGAAGACCGTGTGAATCACTGTCTGTTTACTCTGTACAAGAGAGGGCTTGTTGAGATTAGCAGATCCAGCCCACCTCTCTATGCTGTTAGTGATTCGTTCCTGCACAAGGGTCCCAGAAGTCCAGGGGTCATTGGCGCAGAGAGAAAGCAGGAAACGTTAATCCGAGGACGAAGCCACAGCGACGACTGGTGTGAACGGCAAAGGCGACATTCGTATGGCTCTCGTGAAAGTAGGCAAAGACAGGAATCTCGAGTAGTGGACAACGCGAGAGCGTCGGCCAGATCCAATGGACTACACGGTGCCATTCCAAGCGAACCGCGAATCTCGCCCTATTTCTGCAAGTACTGTAAACTGCCGTTTCAATCCGCTGCACAATTCGAGGAACACCTCCAAAGCACAAAACATCAAAACAAATATGCAAAGTACAATGCCGTGCCCTACAGGAAGTTTTGCGAATATTGCAAGGTGCATCTGAATTCGGAGTCGCAAGCCAAAGAACATTTCAACAGTGGAAGACACGAGCAGACAGTTGCAAAGTCACAGAAGGCACCTCTCAAACAGCACCTGCCATTGGTCTCGTTCACCCAGGAGCCCTACTTGGAGACCACGACCAGAACAGAGCCATACTCTTACCAAAGGGAATTGTATGGCAAGGCAATGACGACAAACTCTGTGTGTTTCCTACCAACAGGTAGTGGGAAAACTCTGGTCGCAGCTTTGGTAATTGCTCATATGCTTAAGCTCAATCCATGTCGCCAGGTGGTGTTTCTCGTCGATCGAGTCTTACTGGTTCTCCAACAGAGTGACTATCTGAGAAGCGAGTTGTCACATATCCGAGTTGCCGATGAAGGGAGCTCCAATTCTTTCAACGGCACAAGACCCATTCGCATCGGCGCTGTGTGCGGTGAAATGAGAAAACTGGAAGGAAATTCTCGTATCTATGAGCAAGATGTGTTGATTATCACAGCTGACTGTTATAGAAATCATCTCAACAACGGAACGCTTCGTTTCGAAGACGTTTCGCTGATCGTCCTTGACGAAGCCCATCATTGCAACAAAGATCATCCATACAACGTGATCATACGGGACTTTTATCTTCGAGAGGACGATCTTCTCGGTCATCGCCCTAAGGTCCTGGGCCTGACTGCATCGCCAGCTGGCGAGCTTTCGTTGGACAAGACAACAAAGCGGTTGCAACGTCTCTTGGGAAATCTGGATGATGCGAGGCTCTTAAACGTGTCACGCAGTATCCAGAAACTGGATGAAAAGACAAATAAGGCGCCTCCAGAGTGCGTGACAGCCTTGTGCACACCACCGGAGGAAGAGCTAAGGGATGCCTTGATGGAATACGTGACCAAAGCCTTCAACTTGACAGTTCGTTTGAGTGAGATGAAGGACTACAAAGATATTTTCCAGCCCTCGTCAGGCGGGATGTTCAGCATAGACGACGTCCACCCCGTTCTTCGTGTCACGGACAAAATAATTCTCTCACGTCCAGACTCTAATGCTTTGAGTGCCCTCCTACATTTCCAGATCATTTGTGAAGCCATCTGTGCGCTGCAGGAGTGTGGAAGACAAGTAGCACTGAACCAAATGGCTGAGCTTGCAGGGGAGGGATGCCCTCATGGGTTCCAATGGGCAGAAAGCATGGGCTTACCTTCCAGCCAACTCTGTTCACATTTTGGTCAATACTTCTGTCCAGGTTTGCTGTGGAGTCCCAACCTGGCTAGAACTGCATCTGCCGCAGATCAACTTGTTGAGTTCTTATCAAAAGAGACCTGGCACGGAGTGTGTGGTCAAAGAGCTGCTTGGGTCCTCGTTTTGGTCACTCGAAAGCGAACAGCCAGCCATCTCGCAAACTACTTGTCGAGCTCCCCCCAACTTCAGGCTCGTGGAATAACGAGCGTTTGCTTGGAAGATCAAGGAAGCGGCCCGGGTGAGCAAGATTTGGTTGCTTTTGAGCCAGGAGAAGTACTCCAGCGAATTTGTGATGGATTTGTTCAAATTGTTGTTTCTACGAGCGCCCCTGAGGATAGTCTCGGTTTGCCAAGTTGCCAGTTGGTGGTCCAAATGAATCCTCCCAGCTCTACTCAGGCTCTCACGCAAATACGCGCCCGAAGCCAGGCTGCAAGGTTTGTGTGCATCTCCAGAAACGAGGAACAGGCCAAAAAGATTGAAGATTTGTTACGACGAGAAGAGAACATGAAACGTGCTGTAAGAATCCTAAACGGGTTGTAGGTAGATAATGTGCGATATGTGTCTCAGGTCCCGGTTGTTGAAAAGTGGATCTTGCTATCCATCGCTGTAAATCAAGAGGCTAGGATATGCGCGTTTGAAGCCACGTGGATAGTGTTACGAACTCTTTGAACAACCAAAACCTGATCATCATCGAATTAATATGAGATGGCGAACTAATATTAGCTATAGCTTGCACAACAGGCGTTATTGTAGAAGCTGATTGGAGTTTTTAGCGCAAGGTGCGAAACACGCGGGGGTAGAGAGATGTTTGATTTTCTCTTTCTCGAGTGTCACGCGCGTTGCGTGACAAACACCTCATAAGCTCCCCTGTTGTGATAGGCTGAAATAAATTAATTTTTAAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7S8J7	Dicer-like protein 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dcl-1 PE=2 SV=1
A4RKC3	Dicer-like protein 1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL1 PE=3 SV=2
Q1DKI1	Dicer-like protein 1 OS=Coccidioides immitis (strain RS) OX=246410 GN=DCL1 PE=3 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF12171 all species →	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR022755 all species →	Domain	Zinc finger, double-stranded RNA binding	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g12744.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.