Gene detail

Detailed information of g12759.t1 in Montipora capitata

Genomic Location: Sc0000419:214109...240142
NR annotation: XP_015770513.1, PREDICTED: uncharacterized protein LOC107348935 isoform X3 [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g12759.t1

atgaagttctcgattatggtccctgtgactctaagagaattactttcttggtcaagttttgagggcttctttgcatctaaaggcgcagcgtatgctctacctgatggagactttacacgacgtgccagtaaacatggaggggaaatgcagcatcatcttcaggccatggtcaacttacttcgggatgaagatgttcttagacttgttgtcaaactagaatgtcagtatcccaacagaattcgctatttaacgattgtgtcagcctttggccctgatgaggaggaacaaagtattgtaatgggtgtagactggatggacaaggccaccattggtcttgtggttccactgtacagagatacaaccatcaagcttgatggtgatggtggcttcaaaatgtcttcagctgacaaaacgaacattttcaaaccaatttctgttcagaccatgtggactgcgttgcaatggattcacaaatgcagtgacatcgccaggaaaaacaactacttccaccctaatggttcttcacatgcctgggttcaatattactataccaaaataacatcagacagaatctgcttaaatgaatggcatcaaatggatgacattgagtccagacgtcctgactcaccaattggaacaaggcaggtcatctttcctgaaaaggaacttgtcatgaagcttatccgtcacaagcttagagaggttatgatgaaagttgaccttgaagaagtaacgacacgacaggtgcgaaccatgctagaggaggacacccaaatggatcttaaagaataccgatcttttattgacgaagagatattcactattttgggccagatggactcggcatccaaaatatttgatcatgtttaccttggttcagaatggaatgcttctaatttggaggaactcaaggagaacagagttggctatattctgaatattacaagagaaattgacaacttctttccagggacattctgttatcacaacataagagtttacgatttggatgaaactgaattgcttcaccactgggataatacctacaaatttatacagagagccaaaaatgctggttcaaacgtccttgtgcactgtaggatgggtatcagcagatcagcatcaacggttattgcttatggtatgaaagagtatggctggtctttgggggacaccatgaaatacgtcaaagctcggagaagcgttgttcagccaaatcaaggattttggaagcagctcattacatatgaaggaattttgaactcaagtaaacagcgctacaataaattgttcacaaaggagtcagagcctgctgacacagaaagtactgcaaagaggaaaaagctaggaaacgctaccaataaaacaccagaacaactggctagagaagagggcgcggaaaatgtacatgatttatcaatagaggctcaatcggtagtgactgcggaggaaacagcgaacgactcgggaattggtcgggtgcttgccgaaggtacgggagacttgggcgtttccacgagttcgttacccgaaaagaaagatggcgattcatcaacaaattcaccatttgaatcaagtgacgagttagtcaagggggctgattctctgcgtattttaagaatccttggaacagaaaagacttccctccatagggtgaggtcagtgccaactttagcgagtggtccagcaagcagacaagaatcagacatcggagctggtggtaattttcaaaggtcaaactcgttgagagagcgtgggcaaaggaatgtagagcaactgcgaattgtcttggagggaaaatctatcagtgacgagagtatgactgaatttagtcagaaaatgaaagggagctttaaaccggatgtcaagtcacttatgcatgagtcaagtcgtgtcgaaactgaaacgaacaataaagaccacggaagtctgccaagagaattgcatggagttcttgaaagtgggtttgtgaagcgtgaatctaggaaattcgaggaaggtgtctatagtgttccctctgttgaggaagtgctggaggataaatctgagggagtggtggtcgaagaatgtgatgcgtgcgaagggaaaccgagggagagtacgcttggagaagaacccgagcctggagttgtaaaaaagcacaaagaagagtatgaactcaagcaaagccagagtttaaaaagaggtgctgtctatcagcgagacggcagcgttgaggaaagtacgttgaagcgggagaaaggtgaagtgtgtgctggtttgatatccaaggatgaagaaaggtctgaggcggatcccgtttctgttacgaacattgacgcgctggtaaaaaaggcgaacgaggacataaaacaagaagtatccatgtggagaaattctaagaagggatttaagatgcaggcgttcgggcatcaagaaggagagttgattgaggactcttttgatagcaacgaagcggggaaaacaaatgcggatgctcaggaaaacattgggaatctttcaaatggagttagcgaatcaatacacaaatccgacgagttcttggaaacggcgttgcccatcaggagaaacgaaggctcagtcggcggaactgagggtcaaggccaagttagtgttcagcaaggtagtgtgttgtcagacgagcgaacagattgtaaagctgttaaacagggtgatgaaagtattctgcaacagggtttggttaaacgtcacactcttttgattgaagaaagattgcagccgattggtcaaatagcacacaaacaaagtgagggaggtacaggagatgaactaacagttgacaacggagggaatgtaacatcagttgaactgacaggagaaccaagagattcgctcatggaaattgaaacgttcaaatcatcttttgagaacgatacgaatgctcgctcagaaacgtctgtaagaacggtagatgctggggatttagacaacctaaagggtgacagcgaaatggaagatatccctcaaagaggattagtcaaacgtcatacgctgctgatcgaaggatggcttaatcctttagaacaagtgaagaatgccgagaacgaaataagcaaagacgattgcaaagatgaccagcgagagcaggcctcttattcagaaagtgtgccggatgttcgaggtgatgtcgtgactgaagtagaagtatcagaagaaggaagcgtcgttgcagaagggacttataaatgtgatttgttagaggatcgacaggacaaagctagtgaggaagactttgagagcatccttcagaaaggtttagtgaaacgacacacacttttgatcgaaggaaggctgcaaccttcactcactcaagagatggacgatgaaaggaaagatgaacctttagtccacgaagaaacggatcaatccacgttagtaacagaaacaggagggacagatttcgattcagagcagctgagtgttggacaggatgttagtgataaagtgaatgaaccctcaaagacagaaggtatggacaggggggaagaaaggggactaggaacgacatgtgaacaggatacagatcttccagcgccgaagggtttagtaaaacgtcatacgctattgatagaaggaaggctgcacccatttgatcaagacgtcgaaggagaagatagcaaactgaatgaagaagcaaggattaatcaagaggcatgtacatatgtagatcctcagaggtatcaagttgagcgggcaactgaactcgcttctgaagaaggtgaagaagagaagcgggacgaactcagagcgtcaggtgtagtaaaaagagaaaaaatgcgcattgaagagagggtaaatccagctgtgggcgaagcgtcatttagccaacaagaaggtgaaattgtaactggaagcgagaggagctcggcacctaaaccagccagcgaagacagtgaaacctgtcgagatgtacaaaatgaagatgatgatacgatggaagataaagtggaagagaaggagcaagatgaagtcggcgtcgacacctcaagcgtggtacgtgtgaaagaccacacccaacacttggaaggcatcattcgcattactacaacttcaaaggatatagaaaaaccgaaacatgaaacactcagagaggatcttcatggctcaactgacaaatcgcctaaaattgtcattattccgcgatcgagttcagattatcaaattgcacaacgaacggagacaaacttgccagaggaactctttgagggtaggttggaggagattttgagcgaaagcgcagttaatatagctcttatgaaagcccaggaaagtttggatttggaaaatgaaacatttgttgattggaatgttggaaacgtaaaacagagaactcgagcctttgaagaagtcgtgggacatgtaaataacggcaccgaaaacccgcttcgtcgaagtcactcgttgccaagaacaattcatccatctgaaaaatatgctttacgtcgtcggtcgttttccgatgtatcggaaatcgtttcgtccagctccggtcgagaggtcggttataccattcagtttagtaacggcgaaacttcaagttcctcaacactacctcttaactggagccaccttcaacagcggcagtaa

Transcript

g12759.t1

ATGAAGTTCTCGATTATGGTCCCTGTGACTCTAAGAGAATTACTTTCTTGGTCAAGTTTTGAGGGCTTCTTTGCATCTAAAGGCGCAGCGTATGCTCTACCTGATGGAGACTTTACACGACGTGCCAGTAAACATGGAGGGGAAATGCAGCATCATCTTCAGGCCATGGTCAACTTACTTCGGGATGAAGATGTTCTTAGACTTGTTGTCAAACTAGAATGTCAGTATCCCAACAGAATTCGCTATTTAACGATTGTGTCAGCCTTTGGCCCTGATGAGGAGGAACAAAGTATTGTAATGGGTGTAGACTGGATGGACAAGGCCACCATTGGTCTTGTGGTTCCACTGTACAGAGATACAACCATCAAGCTTGATGGTGATGGTGGCTTCAAAATGTCTTCAGCTGACAAAACGAACATTTTCAAACCAATTTCTGTTCAGACCATGTGGACTGCGTTGCAATGGATTCACAAATGCAGTGACATCGCCAGGAAAAACAACTACTTCCACCCTAATGGTTCTTCACATGCCTGGGTTCAATATTACTATACCAAAATAACATCAGACAGAATCTGCTTAAATGAATGGCATCAAATGGATGACATTGAGTCCAGACGTCCTGACTCACCAATTGGAACAAGGCAGGTCATCTTTCCTGAAAAGGAACTTGTCATGAAGCTTATCCGTCACAAGCTTAGAGAGGTTATGATGAAAGTTGACCTTGAAGAAGTAACGACACGACAGGTGCGAACCATGCTAGAGGAGGACACCCAAATGGATCTTAAAGAATACCGATCTTTTATTGACGAAGAGATATTCACTATTTTGGGCCAGATGGACTCGGCATCCAAAATATTTGATCATGTTTACCTTGGTTCAGAATGGAATGCTTCTAATTTGGAGGAACTCAAGGAGAACAGAGTTGGCTATATTCTGAATATTACAAGAGAAATTGACAACTTCTTTCCAGGGACATTCTGTTATCACAACATAAGAGTTTACGATTTGGATGAAACTGAATTGCTTCACCACTGGGATAATACCTACAAATTTATACAGAGAGCCAAaaatgcTGGTTCAAACGTCCTTGTGCACTGTAGGATGGGTATCAGCAGATCAGCATCAACGGTTATTGCTTATGGTATGAAAGAGTATGGCTGGTCTTTGGGGGACACCATGAAATACGTCAAAGCTCGGAGAAGCGTTGTTCAGCCAAATCAAGGATTTTGGAAGCAGCTCATTACATATGAAGGAATTTTGAACTCAAGTAAACAGCGCTACAATAAATTGTTCACAAAGGAGTCAGAGCCTGCTGACACAGAAAGTACTGCAAAGAGGAAAAAGCTAGGAAACGCTACCAATAAAACACCAGAACAACTGGCTAGAGAAGAGGGCGCGGAAAATGTACATGATTTATCAATAGAGGCTCAATCGGTAGTGACTGCGGAGGAAACAGCGAACGACTCGGGAATTGGTCGGGTGCTTGCCGAAGGTACGGGAGACTTGGGCGTTTCCACGAGTTCGTTACCCGAAAAGAAAGATGGCGATTCATCAACAAATTCACCATTTGAATCAAGTGACGAGTTAGTCAAGGGGGCTGATTCTCTGCGTATTTTAAGAATCCTTGGAACAGAAAAGACTTCCCTCCATAGGGTGAGGTCAGTGCCAACTTTAGCGAGTGGTCCAGCAAGCAGACAAGAATCAGACATCGGAGCTGGTGGTAATTTTCAAAGGTCAAACTCGTTGAGAGAGCGTGGGCAAAGGAATGTAGAGCAACTGCGAATTGTCTTGGAGGGAAAATCTATCAGTGACGAGAGTATGACTGAATTTAGTCAGAAAATGAAAGGGAGCTTTAAACCGGATGTCAAGTCACTTATGCATGAGTCAAGTCGTGTCGAAACTGAAACGAACAATAAAGACCACGGAAGTCTGCCAAGAGAATTGCATGGAGTTCTTGAAAGTGGGTTTGTGAAGCGTGAATCTAGGAAATTCGAGGAAGGTGTCTATAGTGTTCCCTCTGTTGAGGAAGTGCTGGAGGATAAATCTGAGGGAGTGGTGGTCGAAGAATGTGATGCGTGCGAAGGGAAACCGAGGGAGAGTACGCTTGGAGAAGAACCCGAGCCTGGAGTTGTAAAAAAGCACAAAGAAGAGTATGAACTCAAGCAAAGCCAGAGTTTAAAAAGAGGTGCTGTCTATCAGCGAGACGGCAGCGTTGAGGAAAGTACGTTGAAGCGGGAGAAAGGTGAAGTGTGTGCTGGTTTGATATCCAAGGATGAAGAAAGGTCTGAGGCGGATCCCGTTTCTGTTACGAACATTGACGCGCTGGTAAAAAAGGCGAACGAGGACATAAAACAAGAAGTATCCATGTGGAGAAATTCTAAGAAGGGATTTAAGATGCAGGCGTTCGGGCATCAAGAAGGAGAGTTGATTGAGGACTCTTTTGATAGCAACGAAGCGGGGAAAACAAATGCGGATGCTCAGGAAAACATTGGGAATCTTTCAAATGGAGTTAGCGAATCAATACACAAATCCGACGAGTTCTTGGAAACGGCGTTGCCCATCAGGAGAAACGAAGGCTCAGTCGGCGGAACTGAGGGTCAAGGCCAAGTTAGTGTTCAGCAAGGTAGTGTGTTGTCAGACGAGCGAACAGATTGTAAAGCTGTTAAACAGGGTGATGAAAGTATTCTGCAACAGGGTTTGGTTAAACGTCACACTCTTTTGATTGAAGAAAGATTGCAGCCGATTGGTCAAATAGCACACAAACAAAGTGAGGGAGGTACAGGAGATGAACTAACAGTTGACAACGGAGGGAATGTAACATCAGTTGAACTGACAGGAGAACCAAGAGATTCGCTCATGGAAATTGAAACGTTCAAATCATCTTTTGAGAACGATACGAATGCTCGCTCAGAAACGTCTGTAAGAACGGTAGATGCTGGGGATTTAGACAACCTAAAGGGTGACAGCGAAATGGAAGATATCCCTCAAAGAGGATTAGTCAAACGTCATACGCTGCTGATCGAAGGATGGCTTAATCCTTTAGAACAAGTGAAGAATGCCGAGAACGAAATAAGCAAAGACGATTGCAAAGATGACCAGCGAGAGCAGGCCTCTTATTCAGAAAGTGTGCCGGATGTTCGAGGTGATGTCGTGACTGAAGTAGAAGTATCAGAAGAAGGAAGCGTCGTTGCAGAAGGGACTTATAAATGTGATTTGTTAGAGGATCGACAGGACAAAGCTAGTGAGGAAGACTTTGAGAGCATCCTTCAGAAAGGTTTAGTGAAACGACACACACTTTTGATCGAAGGAAGGCTGCAACCTTCACTCACTCAAGAGATGGACGATGAAAGGAAAGATGAACCTTTAGTCCACGAAGAAACGGATCAATCCACGTTAGTAACAGAAACAGGAGGGACAGATTTCGATTCAGAGCAGCTGAGTGTTGGACAGGATGTTAGTGATAAAGTGAATGAACCCTCAAAGACAGAAGGTATGGACAGGGGGGAAGAAAGGGGACTAGGAACGACATGTGAACAGGATACAGATCTTCCAGCGCCGAAGGGTTTAGTAAAACGTCATACGCTATTGATAGAAGGAAGGCTGCACCCATTTGATCAAGACGTCGAAGGAGAAGATAGCAAACTGAATGAAGAAGCAAGGATTAATCAAGAGGCATGTACATATGTAGATCCTCAGAGGTATCAAGTTGAGCGGGCAACTGAACTCGCTTCTGAAGAAGGTGAAGAAGAGAAGCGGGACGAACTCAGAGCGTCAGGTGtagtaaaaagagaaaaaatgcgCATTGAAGAGAGGGTAAATCCAGCTGTGGGCGAAGCGTCATTTAGCCAACAAGAAGGTGAAATTGTAACTGGAAGCGAGAGGAGCTCGGCACCTAAACCAGCCAGCGAAGACAGTGAAACCTGTCGAGATGTACAAAATGAAGATGATGATACGATGGAAGATAAAGTGGAAGAGAAGGAGCAAGATGAAGTCGGCGTCGACACCTCAAGCGTGGTACGTGTGAAAGACCACACCCAACACTTGGAAGGCATCATTCGCATTACTACAACTTCAAAGGATATAGAAAAACCGAAACATGAAACACTCAGAGAGGATCTTCATGGCTCAACTGACAAATCGCCTAAAATTGTCATTATTCCGCGATCGAGTTCAGATTATCAAATTGCACAACGAACGGAGACAAACTTGCCAGAGGAACTCTTTGAGGGTAGGTTGGAGGAGATTTTGAGCGAAAGCGCAGTTAATATAGCTCTTATGAAAGCCCAGGAAAGTTTGgatttggaaaatgaaacaTTTGTTGATTGGAATGTTGGAAACGTAAAACAGAGAACTCGAGCCTTTGAAGAAGTCGTGGGACATGTAAATAACGGCACCGAAAACCCGCTTCGTCGAAGTCACTCGTTGCCAAGAACAATTCATCCATCTGAAAAATATGCTTTACGTCGTCGGTCGTTTTCCGATGTATCGGAAATCGTTTCGTCCAGCTCCGGTCGAGAGGTCGGTTATACCATTCAGTTTAGTAACGGCGAAACTTCAAGTTCCTCAACACTACCTCTTAACTGGAGCCACCTTCAACAGCGGCAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q76I79	Protein phosphatase Slingshot homolog 1 OS=Mus musculus OX=10090 GN=Ssh1 PE=1 SV=1
Q8WYL5	Protein phosphatase Slingshot homolog 1 OS=Homo sapiens OX=9606 GN=SSH1 PE=1 SV=2
Q76I76	Protein phosphatase Slingshot homolog 2 OS=Homo sapiens OX=9606 GN=SSH2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003472 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782 all species →	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan
PF08766 all species →	DEK_C	DEK C terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR043587 all species →	Family	Protein phosphatase Slingshot-like	Interproscan
IPR020422 all species →	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR014876 all species →	Domain	DEK, C-terminal	Interproscan
IPR000340 all species →	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45864 all species →	SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030837 all species →	Biological Process	negative regulation of actin filament polymerization	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05766	SSH; protein phosphatase slingshot	EC:3.1.3.16 EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g12759.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

145.2Max TPM

52.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	47.17	127.36
whole organisms · low pH treatment	15	15	61.57	145.20
whole organisms · extra low pH treatment pH treatment	12	12	51.00	119.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	127.36
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	120.40
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	116.79
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	115.04
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	96.79
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	90.42
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	36.31
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	30.14
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	29.63
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	28.08
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	26.79
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	23.63
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	23.20
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	22.99
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	21.48
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	21.03
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	19.84
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	13.88
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	10.90
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	10.80
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	5.07
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	145.20
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	130.01
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	122.83
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	102.55
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	90.38
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	88.16
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	39.03
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	36.96
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	33.82
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	31.90
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	31.09
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	30.87
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	15.33
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	12.81
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	12.58
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	119.36
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	111.90
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	101.75
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	87.84
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	38.88
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	31.84
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	28.70
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	21.53
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	19.88
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	18.39
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	16.88
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	15.07

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.