Detailed information of g1277.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_019907306.1, agrin isoform X8 [Esox lucius]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P31696Agrin OS=Gallus gallus OX=9031 GN=AGRN PE=1 SV=3
Q6DIV6Vesicular inhibitory amino acid transporter OS=Xenopus tropicalis OX=8364 GN=slc32a1 PE=2 SV=1
Q6PF45Vesicular inhibitory amino acid transporter OS=Xenopus laevis OX=8355 GN=slc32a1 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyDUB|USP|USP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00335TetraspaninTetraspanin familyFamilyInterproscan
PF01549ShKShK domain-likeDomainInterproscan
PF04991LicDLicD familyDomainInterproscan
PF01825GPSGPCR proteolysis site, GPS, motif MotifInterproscan
PF01490Aa_transTransmembrane amino acid transporter proteinFamilyInterproscan
PF00443UCHUbiquitin carboxyl-terminal hydrolaseFamilyInterproscan
PF12030DUF3517Domain of unknown function (DUF3517)FamilyInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF07714PK_Tyr_Ser-ThrProtein tyrosine and serine/threonine kinaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018499FamilyTetraspanin/PeripherinInterproscan
IPR003645DomainFollistatin-like, N-terminalInterproscan
IPR003582DomainShKT domainInterproscan
IPR002350DomainKazal domainInterproscan
IPR036058Homologous_superfamilyKazal domain superfamilyInterproscan
IPR007074FamilyLicD familyInterproscan
IPR052942FamilyLipopolysaccharide cholinephosphotransferaseInterproscan
IPR000203Conserved_siteGPS motifInterproscan
IPR046338Homologous_superfamilyGAIN domain superfamilyInterproscan
IPR036445Homologous_superfamilyGPCR family 2, extracellular hormone receptor domain superfamilyInterproscan
IPR001879DomainGPCR, family 2, extracellular hormone receptor domainInterproscan
IPR013057DomainAmino acid transporter, transmembrane domainInterproscan
IPR029618FamilyCoiled-coil domain-containing protein 172Interproscan
IPR000626DomainUbiquitin-like domainInterproscan
IPR001394DomainPeptidase C19, ubiquitin carboxyl-terminal hydrolaseInterproscan
IPR050164FamilyUbiquitin carboxyl-terminal hydrolasesInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR018200Conserved_siteUbiquitin specific protease, conserved siteInterproscan
IPR028889DomainUbiquitin specific protease domainInterproscan
IPR021905DomainUbiquitin C-terminal hydrolase-like, DUF3517Interproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR001245DomainSerine-threonine/tyrosine-protein kinase, catalytic domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19282TETRASPANINInterproscan
PTHR43404LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICDInterproscan
PTHR22950AMINO ACID TRANSPORTERInterproscan
PTHR22419COILED-COIL DOMAIN-CONTAINING PROTEIN 172Interproscan
PTHR33395TRANSCRIPTASE, PUTATIVE-RELATED-RELATEDInterproscan
PTHR24006UBIQUITIN CARBOXYL-TERMINAL HYDROLASEInterproscan
PTHR37984PROTEIN CBG26694Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0003333Biological Processamino acid transmembrane transportInterproscan
GO:0005774Cellular Componentvacuolar membraneInterproscan
GO:0015179Molecular FunctionL-amino acid transmembrane transporter activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0007508Biological Processlarval heart developmentInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0061343Biological Processcell adhesion involved in heart morphogenesisInterproscan
GO:0004843Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0016579Biological Processprotein deubiquitinationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14530RPP40; ribonucleases P/MRP protein subunit RPP40EC:3.1.26.5
Ubiquitin systemko04121deepkoala
Mitochondrial biogenesisko03029deepkoala

TOP