Gene detail

Detailed information of g12772.t1 in Acropora digitifera

Genomic Location: chr6Alt:5130735...5150877
NR annotation: XP_029200889.2, follicle-stimulating hormone receptor-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g12772.t1

ATGGCGTCCTCTCCTTTCGTTCTTATCACATTGACGATTTTGCGAGCGTCAGTTCTCGCTGAAGCTGGCAGCCCAAACTGCCTTGCTAGATGTGAGTGTAAAAAGATACCTGGTCGCAATGAACTTGAAGCCAAGTGCTTGTTGGAAGATTTTCAGCAGTTGACGACATCTATTCTTCGACCCGCTGAAATTCAATCTTTGAAGATATCGTTGGCAAAGGAAGTGGAAACAGTTCCGAATGGATTGTTTAAGAACTTTACCAAACTTGAAAACTTAGATCTTTCCAATAACAGCATCAGAGACATAGAAGATGGTGCCTTCTCAAATCTCATTTATTTACAACGTTTGGATCTATCCTCAAATCAACTCGAAAGCTGGAGGGGGAATCTGACCAATGAGTTGCCGCGGTTGATGTTCCTAAACATTTCGGACAACACAAATCTCATACTACCACCAGCGATAATGAAACTGCGCAGACTCAAAGAAATTCGTGGAGTGACCTGGAACAAGCACTGTTTAAATTGCAAGCTGGTCAGAAACTACACTTCCCAAAATGAAGATTTGAAGAAGGATGACATCGATATCTCAGTGTCGCAGCTTGTGAAAGGCGACTACATATCGGGCAAGAAGTTCAACTGTAGGGTGAACAGGCTGGTAGTTAACGAAAGTCTCGTGAACTATGCCAAACATGGATTTTTCCCTCTCTGCCTAGAAGAAGAACACTCGGCGTGTTTGAAAAGCGAAGTTCGAGTCACACCGGTTCATCGCTGTTGGGATCTCGATAATAAAATTCTTAACGTTGTTTACTTTACGTCTCCTATCGCCTTGGTGCTGAATCTCACAGTTGTTTTGGTTTCTCTTACCACAAGAGTCTTGCGTCGGAATGTCACCATGCTTTTAACGTCAAGCATGGCAGCCAGCGACCTCTTGGTCAGTGTATACTCGATTATCTTGGTCACAGCAAGAAAGATGCCGTATGTGGAATATCTAGTTTACCTAGAAGGTCTTTGCAATGCACTTGGATTCATGTGGCTCACAGGGCAAATTGTCAGCTATAAAACCTCACTTTGGTTAACAATTGAGCGCTTTTTAGCAATTGTTTATTGTATGGAGCCTTCTGTCAGAATCACTCGTGGCCGAGCGGTCACCTTGATTGTATTCACGTGGTGTTTGGGCCTGGCTGTTGCGACCCTACCCTTGGCGAAGATCTCTGTATATACAAGTAATACTTATTGCGTTCCTATTCGGCCGATCAAGGACATTCCACATTCGTACGAAATGAGTATTGCGTTGTCCGTATGGGGGATTCTAGTCTACTTCACAATCATTCCCTTGTACATAAAGATCTTCATTTCGGATATACTTCTCAAGGACAACGTCCGTCTAAGATATGAAAGGTTTTCAAGTGCCATGTCGGGTTTTTTTGTCGTGCTCAAGTGGATATGCGCGGTGTTGGTTCTCGTGAGCCGGTTGGTTGGCCTCTCCATGTTCATCGTCTGGGCGTCATACTGTTTCTTCAGAGAATTCCGTACCACTGCACTTTGTGTGAAATTTCATCTTTTCCCCAAACCTAGAATCTTTGAGAGTGCCTGGCTCTTCCTGTGCGCTGTAACATCTTTGTTCTTGATCTTCTATGTGCGCAACTTGAACCATTTCCGTGGATTTCTGCCGATTTTACAGCACCTGATTAAGAAAAAATACTTCTGGAAGCTCGTTGTCACACTTATTTCGGTGTGCATCTACGACCTTCTTACAATGCTGAACAAGCCACAAAAATTGAAGACGCTGTCGTACGTCCTTTTCATGTGCGAAAAGTCTTCTGCAGTGGTAGCGGCACTTATCTTGAACTTTCTTCCTTCAGACGCAGGTGGTCTGTCTAAAAACAAAGCTGCGATGAAGCTGGGACTTTACAGAGCAGTTTTATTCGTGTATGCGCTTGAGGGTTACACGATGACCATCCTTGGCTCGACGATCGCTGTCTACAAAGTCCTTACTGTGCCAAGTTCTCCAGTCAGTAATGATGCGCCTGACAAAGAAGCCGTCGCGAGTTTGATGCTCTTGATAATCAACAATGGTCTGAGGTATTATTTAGCTGAGTTCTTCCTTTCAAAGTTCTTTGACCAAGATGTGGACATCTTGGGGGGTGGAACAAAGAGCATCTTGGAAAGCCTTGCACAACCGGCTACGGTGGACCAGGCTCAAGAAAGTCTAGAAGCATCTGGTCAAATGCCAACTCCTGAGTGA

Transcript

chr6Alt.g12772.t1

ACATTCTCTTAAAAAAATTTTTTTTTCTTCATTGTCAAGAACACTTCCCTCGATGCGAAACAAGATCTGTGCTATAACAGACAAATTTTCCGGATTTAGGCGATAACGAGCGCAGTAATCATTCTTTTAAAGAAATAGATGGCGTCCTCTCCTTTCGTTCTTATCACATTGACGATTTTGCGAGCGTCAGTTCTCGCTGAAGCTGGCAGCCCAAACTGCCTTGCTAGATGTGAGTGTAAAAAGATACCTGGTCGCAATGAACTTGAAGCCAAGTGCTTGTTGGAAGATTTTCAGCAGTTGACGACATCTATTCTTCGACCCGCTGAAATTCAATCTTTGAAGATATCGTTGGCAAAGGAAGTGGAAACAGTTCCGAATGGATTGTTTAAGAACTTTACCAAACTTGAAAACTTAGATCTTTCCAATAACAGCATCAGAGACATAGAAGATGGTGCCTTCTCAAATCTCATTTATTTACAACGTTTGGATCTATCCTCAAATCAACTCGAAAGCTGGAGGGGGAATCTGACCAATGAGTTGCCGCGGTTGATGTTCCTAAACATTTCGGACAACACAAATCTCATACTACCACCAGCGATAATGAAACTGCGCAGACTCAAAGAAATTCGTGGAGTGACCTGGAACAAGCACTGTTTAAATTGCAAGCTGGTCAGAAACTACACTTCCCAAAATGAAGATTTGAAGAAGGATGACATCGATATCTCAGTGTCGCAGCTTGTGAAAGGCGACTACATATCGGGCAAGAAGTTCAACTGTAGGGTGAACAGGCTGGTAGTTAACGAAAGTCTCGTGAACTATGCCAAACATGGATTTTTCCCTCTCTGCCTAGAAGAAGAACACTCGGCGTGTTTGAAAAGCGAAGTTCGAGTCACACCGGTTCATCGCTGTTGGGATCTCGATAATAAAATTCTTAACGTTGTTTACTTTACGTCTCCTATCGCCTTGGTGCTGAATCTCACAGTTGTTTTGGTTTCTCTTACCACAAGAGTCTTGCGTCGGAATGTCACCATGCTTTTAACGTCAAGCATGGCAGCCAGCGACCTCTTGGTCAGTGTATACTCGATTATCTTGGTCACAGCAAGAAAGATGCCGTATGTGGAATATCTAGTTTACCTAGAAGGTCTTTGCAATGCACTTGGATTCATGTGGCTCACAGGGCAAATTGTCAGCTATAAAACCTCACTTTGGTTAACAATTGAGCGCTTTTTAGCAATTGTTTATTGTATGGAGCCTTCTGTCAGAATCACTCGTGGCCGAGCGGTCACCTTGATTGTATTCACGTGGTGTTTGGGCCTGGCTGTTGCGACCCTACCCTTGGCGAAGATCTCTGTATATACAAGTAATACTTATTGCGTTCCTATTCGGCCGATCAAGGACATTCCACATTCGTACGAAATGAGTATTGCGTTGTCCGTATGGGGGATTCTAGTCTACTTCACAATCATTCCCTTGTACATAAAGATCTTCATTTCGGATATACTTCTCAAGGACAACGTCCGTCTAAGATATGAAAGGTTTTCAAGTGCCATGTCGGGTTTTTTTGTCGTGCTCAAGTGGATATGCGCGGTGTTGGTTCTCGTGAGCCGGTTGGTTGGCCTCTCCATGTTCATCGTCTGGGCGTCATACTGTTTCTTCAGAGAATTCCGTACCACTGCACTTTGTGTGAAATTTCATCTTTTCCCCAAACCTAGAATCTTTGAGAGTGCCTGGCTCTTCCTGTGCGCTGTAACATCTTTGTTCTTGATCTTCTATGTGCGCAACTTGAACCATTTCCGTGGATTTCTGCCGATTTTACAGCACCTGATTAAGAAAAAATACTTCTGGAAGCTCGTTGTCACACTTATTTCGGTGTGCATCTACGACCTTCTTACAATGCTGAACAAGCCACAAAAATTGAAGACGCTGTCGTACGTCCTTTTCATGTGCGAAAAGTCTTCTGCAGTGGTAGCGGCACTTATCTTGAACTTTCTTCCTTCAGACGCAGGTGGTCTGTCTAAAAACAAAGCTGCGATGAAGCTGGGACTTTACAGAGCAGTTTTATTCGTGTATGCGCTTGAGGGTTACACGATGACCATCCTTGGCTCGACGATCGCTGTCTACAAAGTCCTTACTGTGCCAAGTTCTCCAGTCAGTAATGATGCGCCTGACAAAGAAGCCGTCGCGAGTTTGATGCTCTTGATAATCAACAATGGTCTGAGGTATTATTTAGCTGAGTTCTTCCTTTCAAAGTTCTTTGACCAAGATGTGGACATCTTGGGGGGTGGAACAAAGAGCATCTTGGAAAGCCTTGCACAACCGGCTACGGTGGACCAGGCTCAAGAAAGTCTAGAAGCATCTGGTCAAATGCCAACTCCTGAGTGATTTTAGGGAGAAGCTTCAAGAACAAAAAGTGCGGTCAATATTTTCGGCGAACAGCCAACGGAAGTATCCGCAAGCATTCATTGCAGCCTTATTTTGCTATTTAAATAAATGTTTCCGTGAGAC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24372 all species →	GLYCOPROTEIN HORMONE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007189 all species →	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0007190 all species →	Biological Process	activation of adenylate cyclase activity	Interproscan
GO:0008528 all species →	Molecular Function	G protein-coupled peptide receptor activity	Interproscan
GO:0009755 all species →	Biological Process	hormone-mediated signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g12772.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.