Gene detail

Detailed information of g1280.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_020607057.1, uncharacterized protein LOC110045765 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q9TU23	Centrosomal protein of 290 kDa (Fragment) OS=Bos taurus OX=9913 GN=CEP290 PE=1 SV=2
Q6A078	Centrosomal protein of 290 kDa OS=Mus musculus OX=10090 GN=Cep290 PE=1 SV=2
O15078	Centrosomal protein of 290 kDa OS=Homo sapiens OX=9606 GN=CEP290 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05697	Trigger_N	Bacterial trigger factor protein (TF)	Family	Interproscan
PF05698	Trigger_C	Bacterial trigger factor protein (TF) C-terminus	Family	Interproscan
PF00254	FKBP_C	FKBP-type peptidyl-prolyl cis-trans isomerase	Domain	Interproscan
PF02494	HYR	HYR domain	Domain	Interproscan
PF00084	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF13621	Cupin_8	Cupin-like domain	Domain	Interproscan
PF02190	LON_substr_bdg	ATP-dependent protease La (LON) substrate-binding domain	Family	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00520	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046357	Homologous_superfamily	Peptidyl-prolyl cis-trans isomerase domain superfamily	Interproscan
IPR037041	Homologous_superfamily	Trigger factor, C-terminal domain superfamily	Interproscan
IPR005215	Family	Trigger factor	Interproscan
IPR036611	Homologous_superfamily	Trigger factor ribosome-binding domain superfamily	Interproscan
IPR008881	Domain	Trigger factor, ribosome-binding, bacterial	Interproscan
IPR027304	Homologous_superfamily	Trigger factor/SurA domain superfamily	Interproscan
IPR008880	Domain	Trigger factor, C-terminal	Interproscan
IPR001179	Domain	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR003410	Domain	HYR domain	Interproscan
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR043555	Family	Sushi repeat-containing protein SRPX-like	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR037524	Domain	PA14/GLEYA domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR041667	Domain	Cupin-like domain 8	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR003111	Domain	Lon protease, N-terminal domain	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR046336	Homologous_superfamily	Lon protease, N-terminal domain superfamily	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR015947	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR024862	Family	Transient receptor potential cation channel subfamily V	Interproscan
IPR005821	Domain	Ion transport domain	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30560	TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE	Interproscan
PTHR46343	HYR DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR44170	PROTEIN SIDEKICK	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR23327	RING FINGER PROTEIN 127	Interproscan
PTHR10582	TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN	Interproscan
PTHR47272	DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0043335	Biological Process	protein unfolding	Interproscan
GO:0044183	Molecular Function	protein folding chaperone	Interproscan
GO:0051083	Biological Process	'de novo' cotranslational protein folding	Interproscan
GO:0061077	Biological Process	chaperone-mediated protein folding	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005262	Molecular Function	calcium channel activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0098703	Biological Process	calcium ion import across plasma membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03545	tig; trigger factor	-	Protein processing	-	deepkoala