Gene detail

Detailed information of g12825.t1 in Montipora capitata

Genomic Location: Sc0000423:273494...285598
NR annotation: XP_029206466.2, heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X1 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g12825.t1

atgagtgatttcgatgaggcaggtgtgaagaagctaaaggttgcggaactgagagcagaattgcaaaaccgtggcttagattcaaagggaaacaaacccgttttggttgaacgtttactcgaagcaatttctagctccaaagtcacggaagaaaatggtagcgaaactgtgcaagaaactgaggaacagccacaagaagaagcaacagaagaaaaacaggtcactcctgacaaagaagatcagattgagagcgaagtacctgtaacagaagagagtgaagaagtaacgcaaccaagcgaaactgttgaaagcgttgaaccttcggaagcgcctgttcctgaaccagttcgtgaggtggttgaagaaaagccgtcggaagaaccggaagaaacggcatccgaaccaactgagcaagcggagaaggtcgcagagcaggaagatgacaagaagactgaggaggaacctatggaaaccagccaagatgaatcgactactactccgcaacaaacgacagaagatgagaaggcagataaggagaaagaaccagatgatgatgatgtagaaattgtccctgacaccagtagagttgaacctggcgaggaagagactccgcttgacgactctttggtcgtcttggacaaatacaactgcgacctacatctcaaagttgcacctgacggtctgagtggtaaacccctgtcagatgatggattttcttatctcctagcaggggctagagctacctggggtgcaacaaaggggaaaagttgttttgaatgcaaggtgacatcacttatttctgtggagcttcctgaatcagaagagccgaaaaatgaagtcagagtgggttggtcaagtgactcagcaagcttgcagcttggagaaggcaaggagtcttatggatatgattcatctgccaagaaagctcacgactctgaattcacagactatggtcagccatttggagtcgatgatgtaattggctgctatttagatttagagagtgatccaaagacagtgtcatttagcaaaaatggtgaagatatgggagtagcttttgagtttacagaagatttgaaagataaagcactgttccctcatgtggttgtaaagaatgcagaatttactgtcaactttgggtctcaggaagagccttggttttctgctaaggaaggttacactttcatgcagtctgttggtaatgagtctctggtacatggcacgagagggcctgctgataagaaagactgtgaggtatttggtgtagccaggaagagagatgctggaggttacaacaagttgatggacaaggcagcaaaatgcttgcatcggttgtttgaacttgctccaactaagacaagaaactacattctggaccagaccaatgtgtacctttcagctcagaagaaaaaaattcgtccatttgagggtttcatcagaagagccatagtttgcattcccactcaggaagagctgagaaagagaacagaagaccgaaagaaagaaggctttgagcttcctgagaatgctgtcagtgatatgaaaatgagtttcactctgccaaagattggagagttctttgaggaagtcgtgtatgctgaccagcctgagaacaaagctaaaaccattgtagatgaatacatcaaagaaggtcgcagctaccgaagccgatcaggcactggctcagagccacctttcaaacggtctagatttgatgatcgaccacgacatggtgggggctacaacagaaacagaggttatgacgaccgtggaggctacagacgtggaggaggtgggggtagcagtcatggaggctaccagaggtttggtggtggagggcgacccagccgtggatatgggggaggtggtggtggaggttaccgcggtggacgtggaggagggggtggttaccatgatagacgagatcatcgtggcggaggagggagaggtggttatggtggtggaagttatggcggcagtggaggatatcggcagcatcagtcatcgcaccgccaacaccagtctccccagcagcaaaggccacggttccaacagaactatggccagcaacattacagtcatccgcagcaatcaagcagtcagtcgtacaaccagcctcaacaacagcaacagccccagcagcagcagcagtatggatcgggatcatcttacaaccagtactacaactacaaccagggataccaagcaaccacaggataccaacagactggatatgcacaacagcaacagtacggccaagctgcacagcaatcccagcaaccggggacttaccagaattaccaaaactactacacaggatatcaacagcaagcgggctatggcagttacggtggcacagggtatcagtag

Transcript

g12825.t1

ATGAGTGATTTCGATGAGGCAGGTGTGAAGAAGCTAAAGGTTGCGGAACTGAGAGCAGAATTGCAAAACCGTGGCTTAGATTCAAAGGGAAACAAACCCGTTTTGGTTGAACGTTTACTCGAAGCAATTTCTAGCTCCAAAGTCACGGAAGAAAATGGTAGCGAAACTGTGCAAGAAACTGAGGAACAGCCACAAGAAGAAGCAACAGAAGAAAAACAGGTCACTCCTGACAAAGAAGATCAGATTGAGAGCGAAGTACCTGTAACAGAAGAGAGTGAAGAAGTAACGCAACCAAGCGAAACTGTTGAAAGCGTTGAACCTTCGGAAGCGCCTGTTCCTGAACCAGTTCGTGAGGTGGTTGAAGAAAAGCCGTCGGAAGAACCGGAAGAAACGGCATCCGAACCAACTGAGCAAGCGGAGAAGGTCGCAGAGCAGGAAGATGACAAGAAGACTGAGGAGGAACCTATGGAAACCAGCCAAGATGAATCGACTACTACTCCGCAACAAACGACAGAAGATGAGAAGGCAGATAAGGAGAAAGAaccagatgatgatgatgtagaAATTGTCCCTGACACCAGTAGAGTTGAACCTGGCGAGGAAGAGACTCCGCTTGACGACTCTTTGGTCGTCTTGGACAAATACAACTGCGACCTACATCTCAAAGTTGCACCTGACGGTCTGAGTGGTAAACCCCTGTCAGATGATGGATTTTCTTATCTCCTAGCAGGGGCTAGAGCTACCTGGGGTGCAACAAAGGGGAAAAGTTGTTTTGAATGCAAGGTGACATCACTTATTTCTGTGGAGCTTCCTGAATCAGAAGAGCCGAAAAATGAAGTCAGAGTGGGTTGGTCAAGTGACTCAGCAAGCTTGCAGCTTGGAGAAGGCAAGGAGTCTTATGGATATGATTCATCTGCCAAGAAAGCTCACGACTCTGAATTCACAgactatggtcagccatttggAGTCGATGATGTAATTGGCTGCTATTTAGATTTAGAGAGTGATCCAAAGACAGTGTCATTTAGCAAAAATGGTGAAGATATGGGAGTAGCTTTTGAGTTTACAGAAGATTTGAAAGATAAAGCACTGTTCCCTCATGTGGTTGTAAAGAATGCAGAATTTACTGTCAACTTTGGGTCTCAGgaAGAGCCTTGGTTTTCTGCTAAGGAAGGTTACACTTTCATGCAGTCTGTTGGTAATGAGTCTCTGGTACATGGCACGAGAGGGCCTGCTGATAAGAAAGACTGTGAGGTATTTGGTGTAGCCAGGAAGAGAGATGCTGGAGGTTACAACAAGTTGATGGACAAGGCAGCAAAATGCTTGCATCGGTTGTTTGAACTTGCTCCAACTAAGACAAGAAACTACATTCTGGACCAGaCCAATGTGTACCTTTCAGctcagaagaaaaaaattcgTCCATTTGAGGGTTTCATCAGAAGAGCCATAGTTTGCATTCCCACTCAGGAAGAGCTGAGAAAGAGAACAGAAGACCGAAAGAAAGAAGGCTTTGAGCTTCCTGAGAATGCTGTCAGTGATATGAAAATGAGTTTCACTCTGCCAAAGATTGGAGAGTTCTTTGAGGAAGTCGTGTATGCTGACCAGCCTGAGAACAAAGCTAAAACCATTGTAGATGAATACATCAAAGAAGGTCGCAGCTACCGAAGCCGATCAGGCACTGGCTCAGAGCCACCTTTCAAACGGTCTAGATTTGATGATCGACCACGACATGGTGGGGGCTACAACAGAAACAGAGGTTATGACGACCGTGGAGGCTACAGACGTGGAGGAGGTGGGGGTAGCAGTCATGGAGGCTACCAGAGGTTTGGTGGTGGAGGGCGACCCAGCCGTGGATATGGGGGAGGTGGTGGTGGAGGTTACCGCGGTGGACGTGGAGGAGGGGGTGGTTACCATGATAGACGAGATCATCGTGGCGGAGGAGGGAGAGGTGGTTATGGTGGTGGAAGTTATGGCGGCAGTGGAGGATATCGGCAGCATCAGTCATCGCACCGCCAACACCAGTCTCCCCAGCAGCAAAGGCCACGGTTCCAACAGAACTATGGCCAGCAACATTACAGTCATCCGCAGCAATCAAGCAGTCAGTCGTACAACCAGCCTCAACAACAGCAACAGCcccagcagcagcagcagtatgGATCGGGATCATCTTACAACCAGTACTACAACTACAACCAGGGATACCAAGCAACCACAGGATACCAACAGACTGGATATGCACAACAGCAACAGTACGGCCAAGCTGCACAGCAATCCCAGCAACCGGGGACTTACCAGAATTACCAAAACTACTACACAGGATATCAACAGCAAGCGGGCTATGGCAGTTACGGTGGCACAGGGTATCAGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VDM6	Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Mus musculus OX=10090 GN=Hnrnpul1 PE=1 SV=1
Q9BUJ2	Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Homo sapiens OX=9606 GN=HNRNPUL1 PE=1 SV=2
Q00839	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens OX=9606 GN=HNRNPU PE=1 SV=6

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001454 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02037 all species →	SAP	SAP domain	Domain	Interproscan
PF13671 all species →	AAA_33	AAA domain	Domain	Interproscan
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR035778 all species →	Domain	Heterogeneous nuclear ribonucleoprotein U, SPRY domain	Interproscan
IPR003877 all species →	Domain	SPRY domain	Interproscan
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12381 all species →	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g12825.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.