Gene detail

Detailed information of g1285.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_012562272.2, uncharacterized protein LOC105847323 [Hydra vulgaris]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q9H9J4	Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens OX=9606 GN=USP42 PE=1 SV=3
B2RQC2	Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus OX=10090 GN=Usp42 PE=1 SV=1
D3ZU96	Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus OX=10116 GN=Usp42 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05046	Img2	Mitochondrial large subunit ribosomal protein (Img2)	Domain	Interproscan
PF01253	SUI1	Translation initiation factor SUI1	Domain	Interproscan
PF16450	Prot_ATP_ID_OB_C	Proteasomal ATPase OB C-terminal domain	Domain	Interproscan
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007740	Family	Large ribosomal subunit protein mL49	Interproscan
IPR001950	Domain	SUI1 domain	Interproscan
IPR036877	Homologous_superfamily	SUI1 domain superfamily	Interproscan
IPR032501	Domain	Proteasomal ATPase, second OB domain	Interproscan
IPR050221	Family	26S Proteasome Regulatory ATPase	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR050164	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23073	26S PROTEASOME REGULATORY SUBUNIT	Interproscan
PTHR46731	F-BOX ONLY PROTEIN 15	Interproscan
PTHR24006	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan
PTHR46704	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0008540	Cellular Component	proteasome regulatory particle, base subcomplex	Interproscan
GO:0036402	Molecular Function	proteasome-activating activity	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07262	pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7)	EC:3.4.21.-	Ubiquitin system	ko04121	deepkoala
			Proteasome	ko03051	deepkoala
			Peptidoglycan biosynthesis and degradation proteins	ko01011	deepkoala