Detailed information of g129.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_023399024.1, U1 small nuclear ribonucleoprotein 70 kDa-like, partial [Loxodonta africana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P08621U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens OX=9606 GN=SNRNP70 PE=1 SV=2
Q1RMR2U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus OX=9913 GN=SNRNP70 PE=2 SV=1
Q62376U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus OX=10090 GN=Snrnp70 PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|HECT

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00566RabGAP-TBCRab-GTPase-TBC domainFamilyInterproscan
PF00415RCC1Regulator of chromosome condensation (RCC1) repeatRepeatInterproscan
PF00632HECTHECT-domain (ubiquitin-transferase)DomainInterproscan
PF12596Tnp_P_element_C87kDa TransposaseFamilyInterproscan
PF21227Myb_DNA-binding_7Myb-like DNA-binding domainDomainInterproscan
PF03133TTLTubulin-tyrosine ligase familyFamilyInterproscan
PF13895Ig_2Immunoglobulin domainDomainInterproscan
PF07714PK_Tyr_Ser-ThrProtein tyrosine and serine/threonine kinaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052560FamilyRNA-directed DNA polymerase, mobile elementInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000195DomainRab-GAP-TBC domainInterproscan
IPR035969Homologous_superfamilyRab-GAP-TBC domain superfamilyInterproscan
IPR009091Homologous_superfamilyRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIInterproscan
IPR000408RepeatRegulator of chromosome condensation, RCC1Interproscan
IPR000569DomainHECT domainInterproscan
IPR051210FamilyUbiquitin ligases and GEF domain-containing proteinInterproscan
IPR017972Conserved_siteCytochrome P450, conserved siteInterproscan
IPR035983Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan
IPR022242DomainTransposable element P transposase-like, C-terminalInterproscan
IPR051183FamilyU1 snRNP 70 kDa and U11/U12 snRNP 35 kDaInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR011106DomainSeven cysteines, N-terminalInterproscan
IPR029865FamilyDyslexia-associated protein KIAA0319-likeInterproscan
IPR052435FamilyYY1-Associated Transcriptional RegulatorInterproscan
IPR036600Homologous_superfamilyPaired amphipathic helix superfamilyInterproscan
IPR004344FamilyTubulin-tyrosine ligase/Tubulin polyglutamylaseInterproscan
IPR050122FamilyReceptor Tyrosine KinaseInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR020635DomainTyrosine-protein kinase, catalytic domainInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR001245DomainSerine-threonine/tyrosine-protein kinase, catalytic domainInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR36688ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR22957TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEINInterproscan
PTHR22870REGULATOR OF CHROMOSOME CONDENSATIONInterproscan
PTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDInterproscan
PTHR46182FI19480P1Interproscan
PTHR16088YY1 ASSOCIATED PROTEIN-RELATEDInterproscan
PTHR12241TUBULIN POLYGLUTAMYLASEInterproscan
PTHR24416TYROSINE-PROTEIN KINASE RECEPTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005096Molecular FunctionGTPase activator activityInterproscan
GO:0090630Biological Processactivation of GTPase activityInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005506Molecular Functioniron ion bindingInterproscan
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygenInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0017069Molecular FunctionsnRNA bindingInterproscan
GO:0030619Molecular FunctionU1 snRNA bindingInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0001764Biological Processneuron migrationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0031410Cellular Componentcytoplasmic vesicleInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000226Biological Processmicrotubule cytoskeleton organizationInterproscan
GO:0005929Cellular ComponentciliumInterproscan
GO:0015631Molecular Functiontubulin bindingInterproscan
GO:0018095Biological Processprotein polyglutamylationInterproscan
GO:0070740Molecular Functiontubulin-glutamic acid ligase activityInterproscan
GO:0036211Biological Processprotein modification processInterproscan
GO:0004714Molecular Functiontransmembrane receptor protein tyrosine kinase activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007169Biological Processcell surface receptor protein tyrosine kinase signaling pathwayInterproscan
GO:0007275Biological Processmulticellular organism developmentInterproscan
GO:0033674Biological Processpositive regulation of kinase activityInterproscan
GO:0043235Cellular Componentreceptor complexInterproscan
GO:0004713Molecular Functionprotein tyrosine kinase activityInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K05127PTK7, CCK4; PTK7 protein tyrosine kinase 7EC:2.7.10.1
Signaling proteins-deepkoala
Exosomeko04147deepkoala

TOP