Detailed information of g12901.t1.1 in Blastomussa wellsi

Genomic Location: :...
NR annotation: XP_020603607.1, hemicentin-1-like isoform X2 [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
D3YXG0Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q96RW7Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
Q8NDA2Hemicentin-2 OS=Homo sapiens OX=9606 GN=HMCN2 PE=1 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF07679I-setImmunoglobulin I-set domainDomainInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF12662cEGFComplement Clr-like EGF-likeDomainInterproscan
PF07474G2FG2F domainDomainInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR013098DomainImmunoglobulin I-setInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR009017Homologous_superfamilyGreen fluorescent proteinInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR006605DomainG2 nidogen/fibulin G2FInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR026823DomainComplement Clr-like EGF domainInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR050958FamilyCell Adhesion and Cytoskeletal OrganizationInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR013106DomainImmunoglobulin V-set domainInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45080CONTACTIN 5Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K17341HMCN; hemicentin-Domain-containing proteins not elsewhere classifiedko04990deepkoala

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