Detailed information of g1297.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047126220.1, uncharacterized protein LOC100205007 isoform X1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O95602DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens OX=9606 GN=POLR1A PE=1 SV=2
O54889DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus OX=10116 GN=Polr1a PE=1 SV=1
O35134DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus OX=10090 GN=Polr1a PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilybHLH

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05719GPP34Golgi phosphoprotein 3 (GPP34)FamilyInterproscan
PF00010HLHHelix-loop-helix DNA-binding domainDomainInterproscan
PF14598PAS_11PAS domainDomainInterproscan
PF00989PASPAS foldDomainInterproscan
PF13499EF-hand_7EF-hand domain pairDomainInterproscan
PF04983RNA_pol_Rpb1_3RNA polymerase Rpb1, domain 3DomainInterproscan
PF04998RNA_pol_Rpb1_5RNA polymerase Rpb1, domain 5DomainInterproscan
PF05000RNA_pol_Rpb1_4RNA polymerase Rpb1, domain 4DomainInterproscan
PF00623RNA_pol_Rpb1_2RNA polymerase Rpb1, domain 2DomainInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan
PF07679I-setImmunoglobulin I-set domainDomainInterproscan
PF00041fn3Fibronectin type III domainDomainInterproscan
PF01370EpimeraseNAD dependent epimerase/dehydratase familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008628FamilyGolgi phosphoprotein 3-likeInterproscan
IPR038261Homologous_superfamilyGolgi phosphoprotein 3-like domain superfamilyInterproscan
IPR000014DomainPAS domainInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR050933FamilyCircadian Clock Transcription FactorsInterproscan
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR013767DomainPAS foldInterproscan
IPR035965Homologous_superfamilyPAS domain superfamilyInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR050230FamilyCalcium-Regulated Muscle Contraction and Cellular ProcessInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR015699DomainDNA-directed RNA pol I, largest subunit, N-terminal domainInterproscan
IPR038120Homologous_superfamilyRNA polymerase Rpb1, funnel domain superfamilyInterproscan
IPR007066DomainRNA polymerase Rpb1, domain 3Interproscan
IPR007081DomainRNA polymerase Rpb1, domain 5Interproscan
IPR007083DomainRNA polymerase Rpb1, domain 4Interproscan
IPR006592DomainRNA polymerase, N-terminalInterproscan
IPR042102Homologous_superfamilyRNA polymerase Rpb1, domain 3 superfamilyInterproscan
IPR047107DomainDNA-directed RNA pol I, largest subunit, C-terminal domainInterproscan
IPR045867FamilyDNA-directed RNA polymerase, subunit beta-primeInterproscan
IPR000722DomainRNA polymerase, alpha subunitInterproscan
IPR051170FamilyNeural and epithelial cell adhesion domain-containing proteinInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR013098DomainImmunoglobulin I-setInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR001509DomainNAD-dependent epimerase/dehydrataseInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23042CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PASInterproscan
PTHR23048MYOSIN LIGHT CHAIN 1, 3Interproscan
PTHR19376DNA-DIRECTED RNA POLYMERASEInterproscan
PTHR12231CTX-RELATED TYPE I TRANSMEMBRANE PROTEINInterproscan
PTHR43000DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0070273Molecular Functionphosphatidylinositol-4-phosphate bindingInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0034751Cellular Componentaryl hydrocarbon receptor complexInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0016460Cellular Componentmyosin II complexInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0001054Molecular FunctionRNA polymerase I activityInterproscan
GO:0005736Cellular ComponentRNA polymerase I complexInterproscan
GO:0043005Cellular Componentneuron projectionInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02183CALM; calmodulin-Transcription machineryko03021deepkoala
Exosomeko04147deepkoala

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