Gene detail

Detailed information of g13.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: KAF1855211.1, hypothetical protein Lal_00003392 [Lupinus albus]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1RGP0	ATP-dependent zinc metalloprotease FtsH OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=ftsH PE=3 SV=1
A1URA3	ATP-dependent zinc metalloprotease FtsH OS=Bartonella bacilliformis (strain ATCC 35685 / KC583 / Herrer 020/F12,63) OX=360095 GN=ftsH PE=3 SV=1
B8H444	ATP-dependent zinc metalloprotease FtsH OS=Caulobacter vibrioides (strain NA1000 / CB15N) OX=565050 GN=ftsH PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000106 (this species only)
Orthogroup (gene family)	OG0000481 (this species only)
Orthogroup (gene family)	OG0001656 (this species only)
Orthogroup (gene family)	OG0003080 (this species only)
Orthogroup (gene family)	OG0005213 (this species only)
Orthogroup (gene family)	OG0005726 (this species only)
Orthogroup (gene family)	OG0006813 (this species only)
Orthogroup (gene family)	OG0007004 (this species only)
Orthogroup (gene family)	OG0007876 (this species only)
Orthogroup (gene family)	OG0015663 (this species only)
Orthogroup (gene family)	OG0171723 (this species only)
Orthogroup (gene family)	OG0171956 (this species only)
Orthogroup (gene family)	OG0173280 (this species only)
Orthogroup (gene family)	OG0174025 (this species only)
Orthogroup (gene family)	OG0174288 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20146 all species →	NRF	Nose resistant-to-fluoxetine protein, N-terminal domain	Domain	Interproscan
PF03221 all species →	HTH_Tnp_Tc5	Tc5 transposase DNA-binding domain	Domain	Interproscan
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan
PF02151 all species →	UVR	UvrB/uvrC motif	Family	Interproscan
PF08459 all species →	UvrC_RNaseH_dom	UvrC RNAse H endonuclease domain	Domain	Interproscan
PF07890 all species →	Rrp15p	Rrp15p	Family	Interproscan
PF14555 all species →	UBA_4	UBA-like domain	Domain	Interproscan
PF21021 all species →	FAF1	Fas-associated factor 1	Domain	Interproscan
PF00408 all species →	PGM_PMM_IV	Phosphoglucomutase/phosphomannomutase, C-terminal domain	Repeat	Interproscan
PF01434 all species →	Peptidase_M41	Peptidase family M41	Domain	Interproscan
PF02880 all species →	PGM_PMM_III	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF06480 all species →	FtsH_ext	FtsH Extracellular	Family	Interproscan
PF02878 all species →	PGM_PMM_I	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I	Domain	Interproscan
PF01171 all species →	ATP_bind_3	PP-loop family	Family	Interproscan
PF02879 all species →	PGM_PMM_II	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF02852 all species →	Pyr_redox_dim	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	Domain	Interproscan
PF07992 all species →	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006621 all species →	Domain	Nose resistant-to-fluoxetine protein, N-terminal	Interproscan
IPR052728 all species →	Family	Oxygen and lipid transport regulator	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR050863 all species →	Family	Centromere and Transposable Element-Derived Protein	Interproscan
IPR006600 all species →	Domain	HTH CenpB-type DNA-binding domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR052465 all species →	Family	Mitochondrial NAD+ Carrier	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR038476 all species →	Homologous_superfamily	UvrC, RNAse H endonuclease domain superfamily	Interproscan
IPR001943 all species →	Domain	UVR domain	Interproscan
IPR036876 all species →	Homologous_superfamily	UVR domain superfamily	Interproscan
IPR001162 all species →	Domain	UvrC, RNAse H endonuclease domain	Interproscan
IPR050066 all species →	Family	UvrABC system protein C	Interproscan
IPR012459 all species →	Family	Ribosomal RNA-processing protein 15	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR050730 all species →	Family	UBX domain-containing protein	Interproscan
IPR006577 all species →	Domain	UAS	Interproscan
IPR049483 all species →	Domain	Fas-associated factor 1/2-like, UAS domain	Interproscan
IPR012795 all species →	Domain	tRNA(Ile)-lysidine synthase, N-terminal	Interproscan
IPR037219 all species →	Homologous_superfamily	Peptidase M41-like	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR006352 all species →	Family	Phosphoglucosamine mutase, bacterial type	Interproscan
IPR005841 all species →	Family	Alpha-D-phosphohexomutase superfamily	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR005936 all species →	Family	ATP-dependent zinc metalloprotease, FtsH	Interproscan
IPR016055 all species →	Homologous_superfamily	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005843 all species →	Domain	Alpha-D-phosphohexomutase, C-terminal	Interproscan
IPR000642 all species →	Domain	Peptidase M41	Interproscan
IPR016066 all species →	Conserved_site	Alpha-D-phosphohexomutase, conserved site	Interproscan
IPR005846 all species →	Domain	Alpha-D-phosphohexomutase, alpha/beta/alpha domain III	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR011546 all species →	Domain	Peptidase M41, FtsH extracellular	Interproscan
IPR005844 all species →	Domain	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR011063 all species →	Domain	tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal	Interproscan
IPR036900 all species →	Homologous_superfamily	Alpha-D-phosphohexomutase, C-terminal domain superfamily	Interproscan
IPR005845 all species →	Domain	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR004099 all species →	Domain	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	Interproscan
IPR016156 all species →	Homologous_superfamily	FAD/NAD-linked reductase, dimerisation domain superfamily	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR046952 all species →	Family	Glutathione reductase/thioredoxin reductase-like	Interproscan
IPR023753 all species →	Domain	FAD/NAD(P)-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11161 all species →	O-ACYLTRANSFERASE	Interproscan
PTHR14795 all species →	HELICASE RELATED	Interproscan
PTHR19303 all species →	TRANSPOSON	Interproscan
PTHR46131 all species →	SD08549P	Interproscan
PTHR30562 all species →	UVRC/OXIDOREDUCTASE	Interproscan
PTHR13245 all species →	RRP15-LIKE PROTEIN	Interproscan
PTHR23322 all species →	FAS-ASSOCIATED PROTEIN	Interproscan
PTHR23076 all species →	METALLOPROTEASE M41 FTSH	Interproscan
PTHR42737 all species →	GLUTATHIONE REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0051724 all species →	Molecular Function	NAD transmembrane transporter activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0009381 all species →	Molecular Function	excinuclease ABC activity	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0009380 all species →	Cellular Component	excinuclease repair complex	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0000460 all species →	Biological Process	maturation of 5.8S rRNA	Interproscan
GO:0000470 all species →	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0030687 all species →	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan
GO:0016879 all species →	Molecular Function	ligase activity, forming carbon-nitrogen bonds	Interproscan
GO:0004176 all species →	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0030163 all species →	Biological Process	protein catabolic process	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0008966 all species →	Molecular Function	phosphoglucosamine mutase activity	Interproscan
GO:0016868 all species →	Molecular Function	intramolecular phosphotransferase activity	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0071704 all species →	Biological Process	obsolete organic substance metabolic process	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0004362 all species →	Molecular Function	glutathione-disulfide reductase (NADPH) activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006749 all species →	Biological Process	glutathione metabolic process	Interproscan
GO:0034599 all species →	Biological Process	cellular response to oxidative stress	Interproscan
GO:0045454 all species →	Biological Process	cell redox homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26152	SLC25A51_52; solute carrier family 25 (mitochondrial nicotinamide adenine dinucleotide transporter), member 51/52	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.