Detailed information of g1301.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAB3982616.1, RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6NRQ7RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Xenopus laevis OX=8355 GN=ssu72 PE=2 SV=1
Q5ZJQ7RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus OX=9031 GN=SSU72 PE=2 SV=1
Q17QI2RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus OX=9913 GN=SSU72 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04722Ssu72Ssu72-like proteinFamilyInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF06087Tyr-DNA_phosphoTyrosyl-DNA phosphodiesteraseFamilyInterproscan
PF00071RasRas familyDomainInterproscan
PF07699Ephrin_rec_likeTyrosine-protein kinase ephrin type A/B receptor-like DomainInterproscan
PF01272GreA_GreBTranscription elongation factor, GreA/GreB, C-termDomainInterproscan
PF02142MGSMGS-like domainDomainInterproscan
PF02786CPSase_L_D2Carbamoyl-phosphate synthase L chain, ATP binding domainDomainInterproscan
PF02787CPSase_L_D3Carbamoyl-phosphate synthetase large chain, oligomerisation domainDomainInterproscan
PF03449GreA_GreB_NTranscription elongation factor, N-terminalDomainInterproscan
PF03463eRF1_1eRF1 domain 1DomainInterproscan
PF16002HeadcaseHeadcase proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006811FamilyRNA polymerase II subunit AInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR010347FamilyTyrosyl-DNA phosphodiesterase IInterproscan
IPR001806FamilySmall GTPaseInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR005225DomainSmall GTP-binding protein domainInterproscan
IPR011641DomainTyrosine-protein kinase ephrin type A/B receptor-likeInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR005479DomainCarbamoyl-phosphate synthetase large subunit-like, ATP-binding domainInterproscan
IPR001437DomainTranscription elongation factor, GreA/GreB, C-terminalInterproscan
IPR016185Homologous_superfamilyPre-ATP-grasp domain superfamilyInterproscan
IPR006275FamilyCarbamoyl-phosphate synthase, large subunitInterproscan
IPR036805Homologous_superfamilyTranscription elongation factor, GreA/GreB, N-terminal domain superfamilyInterproscan
IPR011761DomainATP-grasp foldInterproscan
IPR006359FamilyTranscription elongation factor GreAInterproscan
IPR011607DomainMethylglyoxal synthase-like domainInterproscan
IPR005480DomainCarbamoyl-phosphate synthetase, large subunit oligomerisation domainInterproscan
IPR033937DomainCarbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domainInterproscan
IPR036897Homologous_superfamilyCarbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamilyInterproscan
IPR028624FamilyTranscription elongation factor GreA/GreBInterproscan
IPR005483DomainCarbamoyl-phosphate synthase large subunit, CPSase domainInterproscan
IPR036914Homologous_superfamilyMethylglyoxal synthase-like domain superfamilyInterproscan
IPR036953Homologous_superfamilyTranscription elongation factor GreA/GreB, C-terminal domain superfamilyInterproscan
IPR022691DomainTranscription elongation factor, GreA/GreB, N-terminalInterproscan
IPR024049Homologous_superfamilyeRF1, domain 1Interproscan
IPR004403FamilyPeptide chain release factor eRF1/aRF1Interproscan
IPR005140DomaineRF1 domain 1/Pelota-likeInterproscan
IPR032862FamilyAlpha-ketoglutarate-dependent dioxygenase alkB homologue 6Interproscan
IPR037151Homologous_superfamilyAlpha-ketoglutarate-dependent dioxygenase AlkB-like superfamilyInterproscan
IPR026066FamilyHeadcase proteinInterproscan
IPR031947DomainHeadcase, middle domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20383RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASEInterproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan
PTHR12415TYROSYL-DNA PHOSPHODIESTERASE 1Interproscan
PTHR47981RAB FAMILYInterproscan
PTHR11405CARBAMOYLTRANSFERASE FAMILY MEMBERInterproscan
PTHR10113PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1Interproscan
PTHR46030ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 6Interproscan
PTHR13425HEADCASE PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004721Molecular Functionphosphoprotein phosphatase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005847Cellular ComponentmRNA cleavage and polyadenylation specificity factor complexInterproscan
GO:0006369Biological Processtermination of RNA polymerase II transcriptionInterproscan
GO:0006378Biological Processobsolete mRNA polyadenylationInterproscan
GO:0006397Biological ProcessmRNA processingInterproscan
GO:0008420Molecular FunctionRNA polymerase II CTD heptapeptide repeat phosphatase activityInterproscan
GO:0070940Biological Processobsolete dephosphorylation of RNA polymerase II C-terminal domainInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0003690Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0008081Molecular Functionphosphoric diester hydrolase activityInterproscan
GO:0017005Molecular Function3'-tyrosyl-DNA phosphodiesterase activityInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0005764Cellular ComponentlysosomeInterproscan
GO:0005770Cellular Componentlate endosomeInterproscan
GO:0042147Biological Processretrograde transport, endosome to GolgiInterproscan
GO:0045335Cellular Componentphagocytic vesicleInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0032784Biological Processregulation of DNA-templated transcription elongationInterproscan
GO:0006807Biological Processobsolete nitrogen compound metabolic processInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0004088Molecular Functioncarbamoyl-phosphate synthase (glutamine-hydrolyzing) activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006541Biological Processglutamine metabolic processInterproscan
GO:0070063Molecular FunctionRNA polymerase bindingInterproscan
GO:0002184Biological Processcytoplasmic translational terminationInterproscan
GO:0003747Molecular Functiontranslation release factor activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006415Biological Processtranslational terminationInterproscan
GO:0016149Molecular Functiontranslation release factor activity, codon specificInterproscan
GO:0018444Cellular Componenttranslation release factor complexInterproscan
GO:1990825Molecular Functionsequence-specific mRNA bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01955carB, CPA2; carbamoyl-phosphate synthase large subunitEC:6.3.5.5
Messenger RNA biogenesisko03019deepkoala
Others-deepkoala
GTP-binding proteinsko04031deepkoala
Lectinsko04091deepkoala
Alanine, aspartate and glutamate metabolismko00250deepkoala

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