Detailed information of g1305.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: KAJ7333202.1, Cohesin subunit SA-2 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9DGN0Cohesin subunit SA-2 OS=Xenopus laevis OX=8355 GN=stag2 PE=1 SV=1
Q8WVM7Cohesin subunit SA-1 OS=Homo sapiens OX=9606 GN=STAG1 PE=1 SV=3
Q9D3E6Cohesin subunit SA-1 OS=Mus musculus OX=10090 GN=Stag1 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02146SIR2Sir2 familyFamilyInterproscan
PF01416PseudoU_synth_1tRNA pseudouridine synthaseDomainInterproscan
PF20175Tra1_centralTra1 HEAT repeat central regionRepeatInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF00822PMP22_ClaudinPMP-22/EMP/MP20/Claudin familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039662FamilyCohesin subunit Scc3/SAInterproscan
IPR050134FamilyNAD-dependent sirtuin protein deacylasesInterproscan
IPR003000FamilySirtuin familyInterproscan
IPR029035Homologous_superfamilyDHS-like NAD/FAD-binding domain superfamilyInterproscan
IPR026590DomainSirtuin family, catalytic core domainInterproscan
IPR020094Homologous_superfamilyPseudouridine synthase TruA/RsuA/RluB/E/F, N-terminalInterproscan
IPR001406FamilyPseudouridine synthase I, TruAInterproscan
IPR041708FamilyPseudouridine synthase PUS1/ PUS2-likeInterproscan
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan
IPR020095Homologous_superfamilyPseudouridine synthase I, TruA, C-terminalInterproscan
IPR020097DomainPseudouridine synthase I, TruA, alpha/beta domainInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR050517FamilyDNA Damage Response and Repair KinaseInterproscan
IPR046807RepeatTra1, HEAT repeat central regionInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR006593DomainCytochrome b561/ferric reductase transmembraneInterproscan
IPR050579FamilyPeripheral Myelin Protein 22/Epithelial Membrane ProteinInterproscan
IPR004031FamilyPMP-22/EMP/MP20/ClaudinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11199STROMAL ANTIGENInterproscan
PTHR11085NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATEDInterproscan
PTHR11142PSEUDOURIDYLATE SYNTHASEInterproscan
PTHR11139ATAXIA TELANGIECTASIA MUTATED ATM -RELATEDInterproscan
PTHR47960DEAD-BOX ATP-DEPENDENT RNA HELICASE 50Interproscan
PTHR23130CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEINInterproscan
PTHR10671EPITHELIAL MEMBRANE PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000785Cellular ComponentchromatinInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0007062Biological Processsister chromatid cohesionInterproscan
GO:0008278Cellular Componentcohesin complexInterproscan
GO:0097372Molecular Functionhistone H3K18 deacetylase activity, NAD-dependentInterproscan
GO:0070403Molecular FunctionNAD+ bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan
GO:0031119Biological ProcesstRNA pseudouridine synthesisInterproscan
GO:1990481Biological ProcessmRNA pseudouridine synthesisInterproscan
GO:0000124Cellular ComponentSAGA complexInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complexInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11417SIRT7, SIR2L7; NAD-dependent protein deacetylase sirtuin 7EC:2.3.1.286
Chromosome and associated proteinsko03036deepkoala

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