Gene detail

Detailed information of g1311.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_038046702.1, uncharacterized protein LOC119720907 [Patiria miniata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CZJ1	Probable U3 small nucleolar RNA-associated protein 11 OS=Mus musculus OX=10090 GN=Utp11 PE=2 SV=1
Q9Y3A2	Probable U3 small nucleolar RNA-associated protein 11 OS=Homo sapiens OX=9606 GN=UTP11 PE=1 SV=2
Q8R5K5	Probable U3 small nucleolar RNA-associated protein 11 OS=Rattus norvegicus OX=10116 GN=Utp11 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000077 (this species only)
Orthogroup (gene family)	OG0000183 (this species only)
Orthogroup (gene family)	OG0000247 (this species only)
Orthogroup (gene family)	OG0000247 (this species only)
Orthogroup (gene family)	OG0000379 (this species only)
Orthogroup (gene family)	OG0001206 (this species only)
Orthogroup (gene family)	OG0004155 (this species only)
Orthogroup (gene family)	OG0004570 (this species only)
Orthogroup (gene family)	OG0007879 (this species only)
Orthogroup (gene family)	OG0016718 (this species only)
Orthogroup (gene family)	OG0041307 (this species only)
Orthogroup (gene family)	OG0059489 (this species only)
Orthogroup (gene family)	OG0170828 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00629 all species →	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan
PF01400 all species →	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF03998 all species →	Utp11	Utp11 protein	Family	Interproscan
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000998 all species →	Domain	MAM domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR001506 all species →	Domain	Peptidase M12A	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR034035 all species →	Domain	Astacin-like metallopeptidase domain	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR050923 all species →	Family	Cellular Process Regulator and RNA Processing Protein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR027124 all species →	Family	SWR1-complex protein 5/Craniofacial development protein 1/2	Interproscan
IPR007144 all species →	Family	Small-subunit processome, Utp11	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR038446 all species →	Homologous_superfamily	CEBP, ZZ domain superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR037688 all species →	Family	Zinc finger B-box domain-containing protein	Interproscan
IPR002374 all species →	Family	cGMP-dependent kinase	Interproscan
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR018488 all species →	Conserved_site	Cyclic nucleotide-binding, conserved site	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33332 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR10127 all species →	DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING	Interproscan
PTHR23308 all species →	NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR23227 all species →	BUCENTAUR RELATED	Interproscan
PTHR12838 all species →	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11	Interproscan
PTHR46601 all species →	ULP_PROTEASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR28634 all species →	ZINC FINGER B-BOX DOMAIN-CONTAINING PROTEIN 1	Interproscan
PTHR24353 all species →	CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0035196 all species →	Biological Process	miRNA processing	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0004692 all species →	Molecular Function	cGMP-dependent protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04739	PRKAR; cAMP-dependent protein kinase regulator	-	Insulin signaling pathway	ko04910	deepkoala
K13108	SNIP1; smad nuclear-interacting protein 1	-	Spliceosome	ko03041	deepkoala
K14769	UTP11; U3 small nucleolar RNA-associated protein 11	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.