Gene detail

Detailed information of g13203.t1 in Montipora capitata

Genomic Location: Sc0000446:214614...248548
NR annotation: XP_029189065.2, LOW QUALITY PROTEIN: acetyl-CoA carboxylase-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g13203.t1

atgtcagatgaactgaatcatattttacaagagctcactactcttaacagacatgaaaatgctaaagttgccctcagagcgagacaggctcttttggcggctcagcaaccgtcgtatgaacttcgtcacaaccaggtggaatccatgtttctctcagccattgacatgtacggcaaccagtttgcctctgatagtttccagaaattgatcctttcggataacgcattatttgacattcttccgagctttttctaccactctaatgaggcagtaaggagggctgcattggaggtttatatcaggcgcagttaccaagcctacgaactcacgacactttatcatgaaaagctcgacgaaagtgttttaatagttgagttccagtttatactccctaacgctcatccaaacaggttgcccctgagagttccatcgagtcgaacagtgcttgctatgccaagggttcgcagtctcagtgaggatatgtttgaccttataaaccaacaccccaccttaaaaccttgtcagagaactggtgtcatggctgccttcccctccatgcctgaatttgaaagacatttcaatgaaatcatgaaccgctttgagccagcaacccctgaacagctgtcgccttcgcccatggcacgaaggattggccttgatcctgtttgggaaatggagaaccgagcagaacatggagctaaaaaggaagaggagccgattcacatcattaacattgccttgagaatccagaagaattccaaagatattgaacttcagcgtaaaatggtgtacgagttcactcagtccaagaaagagatcttaaaagacaaaggaatccgaagaattacatacctgataagcgactgtaagtttcaagaggattctatttatcgacatttggaaccagctcttgcttatcagttggaagtgaaccgcctcagaaactttgatctggaaacagttccaacaacaaatcataatgttcatttgtacctcggctcggctaagaagatctcaggccagtcagaggtgacggattaccgattctttatcagaagcattgtcagacattcggactttatcaccaaggtcaagagaacagactgcaatcacattttccttcattttgttccatgtgtcatcatagaaccaaacaggatagaagaaagtattcgtcacattgtaacgagatacggaagaaggctatggaaactacgcgttttacaggctgaaatcaaagtcacgatcagactcacgcccactggaaataagattccgttgcggatgttcatgtctaatggatctggatattatttagacttcaacatttatcgggaagtgacggaccaaagaacaggacagattgtgtttgagtcttatggacagaagcagggtccccatcatggccttcctatcagcacaccttacgttaccaaggaccatctacagcttaagcgcttttcagcccagtctcttggcaccacttacgtttatgacttccccgaacttttcaaacaggccattatcaacgagtgggaagagtggggcagtgcaagcaaaaaggaaatgaacccggcgaaagatgttgttaaagtaaaggagtatgttttggatgagaatgaccagcttatgccaatgaacagactgcatggagaaaacacgatcggcatgatagcgtggaaaattgaatgcgttacacccacttgccccgaaggacgagagatcgttgttgtagcaaatgatctaaccgttatgattggttcgttcgctcccccagaggacatgctgtttaagagagcatctgaaatggcgagagctcaagggcttccatttgtttacatcgctgctaatagtggcgctcgcattgggttggcagaagaagtgaagcatcattttaaggtggcttggaatgatccacatgctccagagaaggttcgtcttctaggtcgcgatgacggcattggagttgaaaacctgaaaggttctggaatgattgcgggagagatgtcatctgcgtacgatgatattgttaccatgagtcttgtgacgtgccgtgcagtgggtattggctcatacttggttcgactcggtcagcgtgttattcaagttgaaaatgcgcatgtcattctcactggggctggagctcttaacaaggtactcgcacagttaaatggaaagtgtatgtcacgcctacttcacccttgcgtgacacatttggtagtccatgatgattttggaggtatttctgccattatgaactggctttcgtatattccaaagttcaggaatggtcctctgccaataataaaacccaaagatcccgtcgacagagaagtggagtttgttcctccgaaatctcctcatgatccacggcacttcctctgtggagcaccacatccagatatgaaagatgtctggctcagtggcttctttgatcgtgggtcgtttgtggagactttagatggttgggcaaagacagttgtttgtggaagggcaagattgggcggaattcccatgggtgtgattgctgtggaaaccagagcggttgaagttgtcattccggctgatccaggaaatcccgaatctgataccaagctcttcacccaggctggtcaggtgtggtacccagactccgcctacaaaacagctcaagcgattagagatttcaacaaagagcagcttccattgatcatctttgcaaactggcgcggcttctcgggaggaatgaaggatatgtatgaaagtgttttaaagtatggtgcgtacattgttgatgctctgagagagtacgaacaaccagtgttcatctacttacctccaaacggagagcttcgaggaggggcctgggtcgtggttgatccaaccatcaatcccgaggcaatggagatgtacgctgatcaggaaagcagaggaggggtactggagcccgctggtactgtggaaatcaagtttagacggaaagatcttgtgaaagccatgcacagactggacacaaagtgcctggagatcgtcaaggccctcgcctcatcagaattacctgtaaaggaacgaaaaacactggaaagacaacagaaagaaagagaggaacagcttttacccatttaccagcaggtgtctgtgcagtttgctgacctccatgacactccgggaagaatgcaagagaagggagtcattactgttagtgtctcatctgatagagcgggtttcagttga

Transcript

g13203.t1

ATGTCAGATGAACTGAATCATATTTTACAAGAGCTCACTACTCTTAACAGACATGAAAATGCTAAAGTTGCCCTCAGAGCGAGACAGGCTCTTTTGGCGGCTCAGCAACCGTCGTATGAACTTCGTCACAACCAGGTGGAATCCATGTTTCTCTCAGCCATTGACATGTACGGCAACCAGTTTGCCTCTGATAGTTTCCAGAAATTGATCCTTTCGGATAACGCATTATTTGACATTCTTCCGAGCTTTTTCTACCACTCTAATGAGGCAGTAAGGAGGGCTGCATTGGAGGTTTATATCAGGCGCAGTTACCAAGCCTACGAACTCACGACACTTTATCATGAAAAGCTCGACGAAAGTGTTTTAATAGTTGAGTTCCAGTTTATACTCCCTAACGCTCATCCAAACAGGTTGCCCCTGAGAGTTCCATCGAGTCGAACAGTGCTTGCTATGCCAAGGGTTCGCAGTCTCAGTGAGGATATGTTTGACCTTATAAACCAACACCCCACCTTAAAACCTTGTCAGAGAACTGGTGTCATGGCTGCCTTCCCCTCCATGCCTGAATTTGAAAGACATTTCAATGAAATCATGAACCGCTTTGAGCCAGCAACCCCTGAACAGCTGTCGCCTTCGCCCATGGCACGAAGGATTGGCCTTGATCCTGTTTGGGAAATGGAGAACCGAGCAGAACATGGAGCTAAAAAGGAAGAGGAGCCGATTCACATCATTAACATTGCCTTGAGAATCCAGAAGAATTCCAAAGATATTGAACTTCAGCGTAAAATGGTGTACGAGTTCACTCAGTCCAAGAAAGAGATCTTAAAAGACAAAGGAATCCGAAGAATTACATACCTGATAAGCGACTGTAAGTTTCAAGAGGATTCTATTTATCGACATTTGGAACCAGCTCTTGCTTATCAGTTGGAAGTGAACCGCCTCAGAAACTTTGATCTGGAAACAGTTCCAACAACAAATCATAATGTTCATTTGTACCTCGGCTCGGCTAAGAAGATCTCAGGCCAGTCAGAGGTGACGGATTACCGATTCTTTATCAGAAGCATTGTCAGACATTCGGACTTTATCACCAAGgtcAAGAGAACAGACTGCAAtcacattttccttcattttgttCCATGTGTCATCATAGAACCAAACAGGATAGAAGAAAGTATTCGTCACATTGTAACGAGATACGGAAGAAGGCTATGGAAACTACGCGTTTTACAGGCTGAAATCAAAGTCACGATCAGACTCACGCCCACTGGAAATAAGATTCCGTTGCGGATGTTCATGTCTAATGGATCTGGATATTATTTAGACTTCAACATTTATCGGGAAGTGACGGACCAAAGAACAGGACAGATTGTGTTTGAGTCTTATGGACAGAAGCAGGGTCCCCATCATGGCCTTCCTATCAGCACACCTTACGTTACCAAGGACCATCTACAGCTTAAGCGCTTTTCAGCCCAGTCTCTTGGCACCACTTACGTTTATGACTTCCCCGAACTTTTCAAACAGgCCATTATCAACGAGTGGGAAGAGTGGGGCAGTGCAAGCAAAAAGGAAATGAACCCGGCGAAAGATGTTGTTAAAGTAAAGGAGTATGTTTTGGATGAGAATGACCAGCTTATGCCAATGAACAGACTGCATGGAGAAAACACGATCGGCATGATAGCGTGGAAAATTGAATGCGTTACACCCACTTGCCCCGAAGGACGAGAGATCGTTGTTGTAGCAAATGATCTAACCGTTATGATTGGTTCGTTCGCTCCCCCAGAGGACATGCTGTTTAAGAGAGCATCTGAAATGGCGAGAGCTCAAGGGCTTCCATTTGTTTACATCGCTGCTAATAGTGGCGCTCGCATTGGGTTGGCAGAAGAAGTGAAGCATCATTTTAAGGTGGCTTGGAATGATCCACATGCTCCAGAGAAGGTTCGTCTTCTAGGTCGCGATGACGGCATTGGAGTTGAAAACCTGAAAGGTTCTGGAATGATTGCGGGAGAGATGTCATCTGCGTACGATGATATTGTTACCATGAGTCTTGTGACGTGCCGTGCAGTGGGTATTGGCTCATACTTGGTTCGACTCGGTCAGCGTgttattcaagttgaaaatgcGCATGTCATTCTCACTGGGGCTGGAGCTCTTAACAAGGTACTCGCACAGTTAAATGGAAAGTGTATGTCACGCCTACTTCACCCTTGCGTGACACATTTGGTAGTCCATGATGATTTTGGAGGTATTTCTGCCATTATGAACTGGCTTTCGTATATTCCAAagTTCAGGAATGGTCCTCTGCCAATAATAAAACCCAAAGATCCCGTCGACAGAGAAGTGGAGTTTGTTCCTCCGAAATCTCCTCATGATCCACGGCACTTCCTCTGTGGAGCACCACATCCAGATATGAAAGATGTCTGGCTCAGTGGCTTCTTTGATCGTGGGTCGTTTGTGGAGACTTTAGATGGTTGGGCAAAGACAGTTGTTTGTGGAAGGGCAAGattgGGCGGAATTCCCATGGGTGTGATTGCTGTGGAAACCAGAGCGGTTGAAGTTGTCATTCCGGCTGATCCAGGAAATCCCGAATCTGATACCAAGCTCTTCACCCAGGCTGGTCAGGTGTGGTACCCAGACTCCGCCTACAAAACAGCTCAAGCGATTAGAGATTTCAACAAAGAGCAGCTTCCATTGATCATCTTTGCAAACTGGCGCGGCTTCTCGGGAGGAATGAAGGATATGTATGAAAGTGTTTTAAAGTATGGTGCGTACATTGTTGATGCTCTGAGAGAGTACGAACAACCAGTGTTCATCTACTTACCTCCAAACGGAGAGCTTCGAGGAGGGGCCTGGGTCGTGGTTGATCCAACCATCAATCCCGAGGCAATGGAGATGTACGCTGATCAGGAAAGCAGAGGAGGGGTACTGGAGCCCGCTGGTActgtggaaatcaagtttagaCGGAAAGATCTTGTGAAAGCCATGCACAGACTGGACACAAAGTGCCTGGAGATCGTCAAGGCCCTCGCCTCATCAGAATTACCTGTAAAGGAACGAAAAACACTGGAAAGACAACAGAAAGAAAGAGAGGAACAGCTTTTACCCATTTACCAGCAGGTGTCTGTGCAGTTTGCTGACCTCCATGACACTCCGGGAAGAATGCAAGAGAAGGGAGTCATTACTGTTAGTGTCTCATCTGATAGAGCGggtttcagttga

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P11029	Acetyl-CoA carboxylase OS=Gallus gallus OX=9031 GN=ACAC PE=1 SV=1
Q28559	Acetyl-CoA carboxylase 1 OS=Ovis aries OX=9940 GN=ACACA PE=2 SV=1
Q9TTS3	Acetyl-CoA carboxylase 1 OS=Bos taurus OX=9913 GN=ACACA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002167 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01039 all species →	Carboxyl_trans	Carboxyl transferase domain	Family	Interproscan
PF08326 all species →	ACC_central	Acetyl-CoA carboxylase, central region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR011762 all species →	Domain	Acetyl-coenzyme A carboxyltransferase, N-terminal	Interproscan
IPR011763 all species →	Domain	Acetyl-coenzyme A carboxyltransferase, C-terminal	Interproscan
IPR049076 all species →	Family	Acetyl-CoA carboxylase	Interproscan
IPR034733 all species →	Domain	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Interproscan
IPR013537 all species →	Domain	Acetyl-CoA carboxylase, central domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45728 all species →	ACETYL-COA CARBOXYLASE, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016874 all species →	Molecular Function	ligase activity	Interproscan
GO:0003989 all species →	Molecular Function	acetyl-CoA carboxylase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g13203.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g13203.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

139.0Max TPM

58.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	55.65	123.46
whole organisms · low pH treatment	15	15	55.84	139.01
whole organisms · extra low pH treatment pH treatment	12	12	65.66	124.18

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	123.46
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	122.80
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	119.96
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	112.25
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	94.43
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	79.88
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	75.09
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	74.08
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	65.83
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	62.45
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	51.82
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	38.89
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	34.77
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	26.19
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	19.54
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	16.40
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	14.71
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	13.62
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	13.10
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	5.02
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	4.45
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	139.01
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	132.66
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	81.64
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	74.07
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	58.53
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	56.80
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	54.84
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	53.53
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	49.60
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	37.90
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	28.95
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	27.23
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	15.53
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	15.51
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	11.74
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	124.18
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	115.79
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	112.57
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	87.80
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	71.59
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	71.37
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	68.57
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	56.52
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	29.28
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	25.16
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	14.47
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	10.66

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.