Gene detail

Detailed information of g13204.t1 in Montipora capitata

Genomic Location: Sc0000446:255448...279672
NR annotation: XP_029189065.2, LOW QUALITY PROTEIN: acetyl-CoA carboxylase-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g13204.t1

atgtccgcttcggacaacgattcagacgtgagtgaagatggaatttcgttgaagattgactcgaaaggctccaaggactacaacattgctaccccagctgaattcgttaaaagatttggagggaagagagtggtagaaaaagttttgattgccaataatggtattgccgccgtgaaatgtatgcgatctgtcagacggtgggcctatgaattgtttggaaatgagaaggctattcggtttgttgccatggttacacctgaagaccttagggcaaatgctgagtatatcaagatggcagatcagtatgttccagtaccaggaggaacaaacaatcacaactatgcgaatgttgaactcattttggacatcgccaaaagaatccctgttcaggctgtttgggctggatggggacacgcttctgagaatccaaaacttcctgatctcctttcaaaacatggtatcaccttcataggtccccctgcttcagcaatgtgggctctgggtgataaaattgcatcaactattgttgctcagactgttggtgtcccaaccctaccctggagtggatcaggtcttaaacttgatgccacatccaatgactttgttgatggcaaagttgtaagtgtgtcacatgatctctacatgaaaggctgtatacaagatgtcagtgaaggcatcaagatcgctagagacattggttaccctgtgatgatcaaggcttctgagggaggtggtgggaaaggaatcagaaaagcatctaatgatgatgaatttacaaactttctcagacaggtgcaaactgaggttcctggctctccagtttttgttatgaagctagctaaaaatgcaagacatctcgaagtgcagcttttggctgatgagtatggaaatgcaatgtccatttttggaagagactgctcagtgcaacgcagacatcaaaagatcattgaggaggctcctgcttccatagcaaagcctgaagtattcaagaagatggaagaggatgcagtaaaactcggtcgtttggtgggctatgtcagtgcaggaacagttgaatatttgtatcatgctgagtctcatacgtttcatttccttgaacttaatccaagattacaggtggaacatccttgcacggagatggtatctgacataaatctccccgcagcgcagcttcagattgctatgggaatcccgctgtacaacattaaggacgtccgaacaatgtatggtgttgacccttttggaaaagagccgatagattttgacaatccccagaaccaaccaaaaccaaagggacacgtcattgctacacgcatcacttcggaaaacccagacgagggatttaaacccagcagcggcaccatcaaagagttaacatttcgaagcatgaaaaatgtgtggggatacttcagtgttggggcggacggtggccttcatgaattcgccgattctcaattcggtcactgcttcgcttggggagaagacagagaggcagcacggaggaacatggtccttgctctgaaagaaatctccatccgtggagattttcgtaccaccgtggaatatctgatcaagcttttggaacatgattacttctcaagtaacataatcgacacaggatggttggactttcttatttcaaagcaagatcagaccgaacgtcctgatgccatcctgggtgtcatttgtggagcagttcatatagcagaggcagggttaagcaagagatatgtcaactttaagtcagctctggagagcagattttgtgatttaaaatatgtcttcaaacatcaaaataaggaaaaagacgtgagattgagagctggtgccctaaggttggtggagccagaaggcctatgtcaggggagaggaagtatgctcaatcgcaaccctgccaagggaccatctcacgaaattcacaagtggaactgtgagttaccaaagaaactagggagaagacgtgaaaaggtaagcaagtccgggcccaacactttttttctggagttaaacgattcgtggacggaagtggaagctcacagaatgagtgatggcggattgcttctctcttggaatgacagcagtcacactacatacatgaaggaagaagtggataggtcaccttctgctggtaagctcattcattttgttgtcgacgatggagggcatgtctttcaaggagaatcttatgcggagatcgaagttatgaagatggttatgcctttgacagtgagcgagagtggttgtgtacactatgtaaagaacccaggagcagtacttgaacctggttcaattgttgccaagttggaacttgatgatcccagtaaagtaacgcaggtgtttcgagttgcacgtgagaatcttcagaatgtcatggacggctacactgttggggaaccacacttttcaagacacttggaagaaaatgtcaaaatgcttatgcaggctttaaaggatcctgcattacctttgctagaactacaggaaatgatttcgtcgatatctgggcgtattccatcctcagttgaggacaatataaagaagcatctgtccagttatgcaagtaacatcacctcagtgctgagccaatttcccagtcaacaggtcaagtatctttag

Transcript

g13204.t1

ATGTCCGCTTCGGACAACGATTCAGACGTGAGTGAAGATGGAATTTCGTTGAAGATTGACTCGAAAGGCTCCAAGGACTACAACATTGCTACCCCAGCTGAATTCGTTAAAAGATTTGGAGGGAAGAGAGTGGTAGAAAAAGTTTTGATTGCCAATAATGGTATTGCCGCCGTGAAATGTATGCGATCTGTCAGACGGTGGGCCTATGAATTGTTTGGAAATGAGAAGGCTATTCGgtttgttgccatggttacaCCTGAAGACCTTAGGGCAAATGCTGAGTATATCAAGATGGCAGATCAGTATGTTCCAGTACCAGGAGGAACAAACAATCACAACTATGCGAATGTTGAACTCATTTTGGACATCGCCAAAAGAATCCCTGTTCAgGCTGTTTGGGCTGGATGGGGACACGCTTCTGAGAATCCAAAACTTCCTGATCTCCTTTCAAAACATGGTATCACCTTCATAGGTCCCCCTGCTTCAGCAATGTGGGCTCTGGGTGATAAAATTGCATCAACTATTGTTGCTCAGACTGTTGGTGTCCCAACCCTACCCTGGAGTGGATCAGGTCTTAAACTTGATGCCACATCCAATGACTTTGTTGATGGCAAAGTTGTAAGTGTGTCACATGATCTCTACATGAAAGGCTGTATACAAGATGTCAGTGAAGGCATCAAGATCGCTAGAGACATTGGTTACCCTGTGATGATCAAGGCTTCTGAGGGAGGTGGTGGGAAAGGAATCAGAAAAGCATCTAATGATGATGAATTTACAAACTTTCTCAGACAGgtGCAAACTGAGGTTCCTGGCTCTCCAGTTTTTGTTATGAAGCTAgctaaaaaTGCAAGACATCTCGAAGTGCAGCTTTTGGCTGATGAGTATGGAAATGCAATGTCCATTTTTGGAAGAGACTGCTCAGTGCAACGCAGACATCAAAAGATCATTGAGGAGGCTCCTGCTTCCATAGCAAAGCCTGAAGTATTCAAGAAGATGGAAGAGgatGCAGTAAAACTCGGTCGTTTGGTGGGCTATGTCAGTGCAGGAACAGTTGAATATTTGTATCATGCTGAGTCTCATACGTTTCATTTCCTTGAACTTAATCCAAGATTACAGGTGGAACATCCTTGCACGGAGATGGTATCTGACATAAATCTCCCCGCAGCGCAGCTTCAGATTGCTATGGGAATCCCGCTGTACAACATTAAGGACGTCCGAACAATGTATGGTGTTGACCCTTTTGGAAAAGAGCCGATAGATTTTGACAATCCCCAGAACCAACCAAAACCAAAGGGACACGTCATTGCTACACGCATCACTTCGGAAAACCCAGACGAGGGATTTAAACCCAGCAGCGGCACCATCAAAGAGTTAACATTTCGAAGCATGAAAAATGTGTGGGGATACTTCAGTGTTGGGGCGGACGGTGGCCTTCATGAATTCGCCGATTCTCAATTCGGTCACTGCTTCGCTTGGGGAGAAGACAGAGAGGCAGCACGGAGGAACATGGTCCTTGCTCTGAAAGAAATCTCCATCCGTGGAGATTTTCGTACCACCGTGGAATATCTGATCAAGCTTTTGGAACATGATTACTTCTCAAGTAACATAATCGACACAGGATGGTTGGACTTTCTTATTTCAAAGCAAGATCAGACCGAACGTCCTGATGCCATCCTGGGTGTCATTTGTGGAGCAGTTCATATAGCAGAGGCAGGGTTAAGCAAGAGATATGTCAACTTTAAGTCAGCTCTGGAGAGCAGATTTTGTGATTTAAAATATGTCTTCAAACATCAAAATAAGGAAAAAGACGTGAGATTGAGAGCTGGTGCCCTAAGGTTGGTGGAGCCAGAAGGCCTATGTCAGGGGAGAGGAAGTATGCTCAATCGCAACCCTGCCAAGGGACCATCTCACGAAATTCACAAGTGGAACTGTGAGTTACCAAAGAAACTAGGGAGAAGACGTGAAAAGGTAAGCAAGTCCGGGCCCAACACTTTTTTTCTGGAGTTAAACGATTCGTGGACGGAAGTGGAAGCTCACAGaatgAGTGATGGCGGATTGCTTCTCTCTTGGAATGACAGCAGTCACACTACATACATGAAGGAAGAAGTGGATAGGTCACCTTCTGCTGGTAAGCTCATTCATTTTGTTGTCGACGATGGAGGGCATGTCTTTCAAGGAGAATCTTATGCGGAGATCGAAGTTATGAAGATGGTTATGCCTTTGACAGTGAGCGAGAGTGGTTGTGTACACTATGTAAAGAACCCAGGAGCAGTACTTGAACCTGGTTCAATTGTTGCCAAGTTGGAACTTGATGATCCCAGTAAAGTAACGCAGGTGTTTCGAGTTGCACGTGAGAATCTTCAGAATGTCATGGACGGCTACACTGTTGGGGAACCACACTTTTCAAGACACTTggaagaaaatgtcaaaatgctTATGCAGGCTTTAAAGGATCCTGCATTACCTTTGCTAGAACTACAGGAAATGATTTCGTCGATATCTGGGCGTATTCCATCCTCAGTTGAGGACAATATAAAGAAGCATCTGTCCAGTTATGCAAGTAACATCACCTCAGTGCTGAGCCAATTTCCCAGTCAACAGGTCAAGTATCTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SWU9	Acetyl-CoA carboxylase 1 OS=Mus musculus OX=10090 GN=Acaca PE=1 SV=1
P11497	Acetyl-CoA carboxylase 1 OS=Rattus norvegicus OX=10116 GN=Acaca PE=1 SV=1
Q28559	Acetyl-CoA carboxylase 1 OS=Ovis aries OX=9940 GN=ACACA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002167 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00364 all species →	Biotin_lipoyl	Biotin-requiring enzyme	Domain	Interproscan
PF08326 all species →	ACC_central	Acetyl-CoA carboxylase, central region	Family	Interproscan
PF00289 all species →	Biotin_carb_N	Biotin carboxylase, N-terminal domain	Domain	Interproscan
PF21385 all species →	ACCA_BT	Acetyl-CoA carboxylase, BT domain	Domain	Interproscan
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF02785 all species →	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000089 all species →	Domain	Biotin/lipoyl attachment	Interproscan
IPR005482 all species →	Domain	Biotin carboxylase, C-terminal	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR011053 all species →	Homologous_superfamily	Single hybrid motif	Interproscan
IPR013537 all species →	Domain	Acetyl-CoA carboxylase, central domain	Interproscan
IPR005481 all species →	Domain	Biotin carboxylase-like, N-terminal domain	Interproscan
IPR049076 all species →	Family	Acetyl-CoA carboxylase	Interproscan
IPR049074 all species →	Domain	Acetyl-CoA carboxylase, BT domain	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR011054 all species →	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR001882 all species →	Binding_site	Biotin-binding site	Interproscan
IPR011764 all species →	Domain	Biotin carboxylation domain	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45728 all species →	ACETYL-COA CARBOXYLASE, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003989 all species →	Molecular Function	acetyl-CoA carboxylase activity	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g13204.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.