Detailed information of g1337.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAB4029212.1, zinc finger BED domain-containing 1-like [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9R1A8E3 ubiquitin-protein ligase COP1 OS=Mus musculus OX=10090 GN=Cop1 PE=1 SV=2
Q8NHY2E3 ubiquitin-protein ligase COP1 OS=Homo sapiens OX=9606 GN=COP1 PE=1 SV=1
P93471E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13923zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF00534Glycos_transf_1Glycosyl transferases group 1FamilyInterproscan
PF00521DNA_topoisoIVDNA gyrase/topoisomerase IV, subunit AFamilyInterproscan
PF00204DNA_gyraseBDNA gyrase BDomainInterproscan
PF16898TOPRIM_CC-terminal associated domain of TOPRIMFamilyInterproscan
PF01751ToprimToprim domainFamilyInterproscan
PF02931Neur_chan_LBDNeurotransmitter-gated ion-channel ligand binding domainFamilyInterproscan
PF10267Tmemb_cc2Predicted transmembrane and coiled-coil 2 proteinCoiled-coilInterproscan
PF04446Thg1tRNAHis guanylyltransferaseDomainInterproscan
PF14413Thg1CThg1 C terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR042755FamilyE3 ubiquitin-protein ligase COP1Interproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR050379FamilyType I Cytokine ReceptorInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR052622FamilyGlycosyltransferase group 1 domain-containing proteinInterproscan
IPR001296DomainGlycosyl transferase, family 1Interproscan
IPR002205DomainDNA topoisomerase, type IIA, domain AInterproscan
IPR013757Homologous_superfamilyDNA topoisomerase, type IIA, alpha-helical domain superfamilyInterproscan
IPR013759Homologous_superfamilyDNA topoisomerase, type IIA, subunit B, C-terminalInterproscan
IPR013506DomainDNA topoisomerase, type IIA, subunit B, domain 2Interproscan
IPR006171DomainTOPRIM domainInterproscan
IPR034157DomainDNA topoisomerase 2, TOPRIM domainInterproscan
IPR018522Conserved_siteDNA topoisomerase, type IIA, conserved siteInterproscan
IPR050634FamilyDNA Topoisomerase II EnzymeInterproscan
IPR013758Homologous_superfamilyDNA topoisomerase, type IIA, domain A, alpha-betaInterproscan
IPR001241FamilyDNA topoisomerase, type IIAInterproscan
IPR031660DomainC-terminal associated domain of TOPRIMInterproscan
IPR013760Homologous_superfamilyDNA topoisomerase, type IIA-like domain superfamilyInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR001154FamilyDNA topoisomerase II, eukaryotic-typeInterproscan
IPR014721Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR018000Conserved_siteNeurotransmitter-gated ion-channel, conserved siteInterproscan
IPR036734Homologous_superfamilyNeurotransmitter-gated ion-channel ligand-binding domain superfamilyInterproscan
IPR006201FamilyNeurotransmitter-gated ion-channelInterproscan
IPR006202DomainNeurotransmitter-gated ion-channel ligand-binding domainInterproscan
IPR019394FamilyTestis-specific protein TEX28/transmembrane and coiled-coil domains proteinInterproscan
IPR038469Homologous_superfamilytRNAHis guanylyltransferase Thg1 superfamilyInterproscan
IPR024956DomaintRNAHis guanylyltransferase catalytic domainInterproscan
IPR007537FamilytRNAHis guanylyltransferase Thg1Interproscan
IPR025845DomainThg1 C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47501TRANSPOSASE-RELATEDInterproscan
PTHR44080E3 UBIQUITIN-PROTEIN LIGASE COP1Interproscan
PTHR23036CYTOKINE RECEPTORInterproscan
PTHR46660-Interproscan
PTHR10169DNA TOPOISOMERASE/GYRASEInterproscan
PTHR18945NEUROTRANSMITTER GATED ION CHANNELInterproscan
PTHR17613CEREBRAL PROTEIN-11-RELATEDInterproscan
PTHR12729UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004896Molecular Functioncytokine receptor activityInterproscan
GO:0009897Cellular Componentexternal side of plasma membraneInterproscan
GO:0019221Biological Processcytokine-mediated signaling pathwayInterproscan
GO:0019955Molecular Functioncytokine bindingInterproscan
GO:0043235Cellular Componentreceptor complexInterproscan
GO:0016757Molecular Functionglycosyltransferase activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003918Molecular FunctionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006265Biological ProcessDNA topological changeInterproscan
GO:0000712Biological Processresolution of meiotic recombination intermediatesInterproscan
GO:0000819Biological Processsister chromatid segregationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006259Biological ProcessDNA metabolic processInterproscan
GO:0005230Molecular Functionextracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0034220Biological Processmonoatomic ion transmembrane transportInterproscan
GO:0005231Molecular Functionexcitatory extracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0007268Biological Processchemical synaptic transmissionInterproscan
GO:0030594Molecular Functionneurotransmitter receptor activityInterproscan
GO:0042391Biological Processregulation of membrane potentialInterproscan
GO:0043005Cellular Componentneuron projectionInterproscan
GO:0045202Cellular ComponentsynapseInterproscan
GO:0050877Biological Processnervous system processInterproscan
GO:1904315Molecular Functiontransmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potentialInterproscan
GO:0012505Cellular Componentendomembrane systemInterproscan
GO:0000287Molecular Functionmagnesium ion bindingInterproscan
GO:0006400Biological ProcesstRNA modificationInterproscan
GO:0008193Molecular FunctiontRNA guanylyltransferase activityInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan

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