Detailed information of g1340.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_015771598.1, PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O1403925S rRNA (cytosine-C(5))-methyltransferase rcm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rcm1 PE=3 SV=3
Q8GYE825S rRNA (cytosine-C(5))-methyltransferase NSUN5 OS=Arabidopsis thaliana OX=3702 GN=NSUN5 PE=1 SV=1
Q8K4F628S rRNA (cytosine-C(5))-methyltransferase OS=Mus musculus OX=10090 GN=Nsun5 PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|HECT

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21148NSUN5_fdxn-likeNOL1/NOP2/Sun domain family member 5, ferredoxin-like domainDomainInterproscan
PF21153NSUN5_NNOL1/NOP2/Sun domain family member 5, N-terminal domainDomainInterproscan
PF13649Methyltransf_25Methyltransferase domainDomainInterproscan
PF02934GatB_NGatB/GatE catalytic domainDomainInterproscan
PF02637GatB_YqeyGatB domainDomainInterproscan
PF03067LPMO_10Lytic polysaccharide mono-oxygenase, cellulose-degradingDomainInterproscan
PF19798Sulfotransfer_5Sulfotransferase domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00658PABPPoly-adenylate binding protein, unique domainFamilyInterproscan
PF10568Tom37Outer mitochondrial membrane transport complex proteinFamilyInterproscan
PF00335TetraspaninTetraspanin familyFamilyInterproscan
PF18410BTHBBasic tilted helix bundle domainDomainInterproscan
PF07738Sad1_UNCSad1 / UNC-like C-terminal FamilyInterproscan
PF00632HECTHECT-domain (ubiquitin-transferase)DomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001678DomainSAM-dependent methyltransferase RsmB-F/NOP2-type domainInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR049561DomainNOL1/NOP2/NSUN 5/7, ferredoxin-like domainInterproscan
IPR023267FamilyRNA (C5-cytosine) methyltransferaseInterproscan
IPR048889DomainNSUN5/RCM1, N-terminal domainInterproscan
IPR025799FamilyProtein arginine N-methyltransferaseInterproscan
IPR041698DomainMethyltransferase domain 25Interproscan
IPR017958Conserved_siteGlutamyl-tRNA(Gln) amidotransferase, subunit B, conserved siteInterproscan
IPR017959FamilyAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /EInterproscan
IPR018027DomainAsn/Gln amidotransferaseInterproscan
IPR014746Homologous_superfamilyGlutamine synthetase/guanido kinase, catalytic domainInterproscan
IPR006075DomainAspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalyticInterproscan
IPR003789Homologous_superfamilyAspartyl/glutamyl-tRNA amidotransferase subunit B-likeInterproscan
IPR004413FamilyAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit BInterproscan
IPR042114Homologous_superfamilyAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1Interproscan
IPR004302DomainCellulose/chitin-binding protein, N-terminalInterproscan
IPR052282FamilyStarch-active lytic polysaccharide monooxygenaseInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR053226FamilyPyrrolopyrazine Biosynthesis Cluster Protein FInterproscan
IPR002004DomainPolyadenylate-binding protein/Hyperplastic disc proteinInterproscan
IPR036053Homologous_superfamilyPABC (PABP) domainInterproscan
IPR037191Homologous_superfamilyVPS9 domain superfamilyInterproscan
IPR003123DomainVPS9 domainInterproscan
IPR050931FamilyMitochondrial Protein Transport MetaxinInterproscan
IPR019564DomainMitochondrial outer membrane transport complex Sam37/metaxin, N-terminal domainInterproscan
IPR018499FamilyTetraspanin/PeripherinInterproscan
IPR018503Conserved_siteTetraspanin, conserved siteInterproscan
IPR000301FamilyTetraspanin, animalsInterproscan
IPR008952Homologous_superfamilyTetraspanin, EC2 domain superfamilyInterproscan
IPR045322FamilyE3 ubiquitin-protein ligase HECTD1/TRIP12-likeInterproscan
IPR041200DomainFKBP3, basic tilted helix bundle domainInterproscan
IPR012919DomainSUN domainInterproscan
IPR000569DomainHECT domainInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR035983Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22807NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAININGInterproscan
PTHR11006PROTEIN ARGININE N-METHYLTRANSFERASEInterproscan
PTHR11659GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATEDInterproscan
PTHR36575BINDING PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G14430)-RELATEDInterproscan
PTHR48331SULFOTRANSFERASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR12289METAXIN RELATEDInterproscan
PTHR19282TETRASPANINInterproscan
PTHR45670E3 UBIQUITIN-PROTEIN LIGASE TRIP12Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0001510Biological ProcessRNA methylationInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan
GO:0070475Biological ProcessrRNA base methylationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0016274Molecular Functionprotein-arginine N-methyltransferase activityInterproscan
GO:0018216Biological Processpeptidyl-arginine methylationInterproscan
GO:0016884Molecular Functioncarbon-nitrogen ligase activity, with glutamine as amido-N-donorInterproscan
GO:0032543Biological Processmitochondrial translationInterproscan
GO:0050567Molecular Functionglutaminyl-tRNA synthase (glutamine-hydrolyzing) activityInterproscan
GO:0070681Biological Processglutaminyl-tRNAGln biosynthesis via transamidationInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0016874Molecular Functionligase activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0001401Cellular ComponentSAM complexInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0007005Biological Processmitochondrion organizationInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016607Cellular Componentnuclear speckInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0048856Biological Processanatomical structure developmentInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0070534Biological Processprotein K63-linked ubiquitinationInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02434gatB, PET112; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit BEC:6.3.5.6
EC:6.3.5.7
Ribosome biogenesisko03009deepkoala
Ubiquitin systemko04121deepkoala
Chromosome and associated proteinsko03036deepkoala
Mitochondrial biogenesisko03029deepkoala

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