Gene detail

Detailed information of g1345.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: KAG2458303.1, COFA1 protein, partial [Polypterus senegalus]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
A0JMY5	NF-X1-type zinc finger protein NFXL1 OS=Xenopus laevis OX=8355 GN=nfxl1 PE=2 SV=1
Q6ZNB6	NF-X1-type zinc finger protein NFXL1 OS=Homo sapiens OX=9606 GN=NFXL1 PE=1 SV=2
Q5R9H4	APOBEC1 complementation factor OS=Pongo abelii OX=9601 GN=A1CF PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF13637	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF17763	Asparaginase_C	Glutaminase/Asparaginase C-terminal domain	Domain	Interproscan
PF00710	Asparaginase	Asparaginase, N-terminal	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF14709	DND1_DSRM	double strand RNA binding domain from DEAD END PROTEIN 1	Domain	Interproscan
PF01873	eIF-5_eIF-2B	Domain found in IF2B/IF5	Family	Interproscan
PF10058	zinc_ribbon_10	Predicted integral membrane zinc-ribbon metal-binding protein	Family	Interproscan
PF08352	oligo_HPY	Oligopeptide/dipeptide transporter, C-terminal region	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF00168	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000967	Domain	Zinc finger, NF-X1-type	Interproscan
IPR034078	Family	Transcription factor NFX1 family	Interproscan
IPR027473	Homologous_superfamily	L-asparaginase, C-terminal	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR037152	Homologous_superfamily	L-asparaginase, N-terminal domain superfamily	Interproscan
IPR006034	Family	Asparaginase/glutaminase-like	Interproscan
IPR027475	Active_site	Asparaginase/glutaminase, active site 2	Interproscan
IPR040919	Domain	Asparaginase/glutaminase, C-terminal	Interproscan
IPR036152	Homologous_superfamily	Asparaginase/glutaminase-like superfamily	Interproscan
IPR027474	Domain	L-asparaginase, N-terminal	Interproscan
IPR041725	Family	Type I (cytosolic) L-asparaginase	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR006535	Family	HnRNP R/Q splicing factor	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR002735	Domain	Translation initiation factor IF2/IF5 domain	Interproscan
IPR016189	Homologous_superfamily	Translation initiation factor IF2/IF5, N-terminal	Interproscan
IPR016190	Homologous_superfamily	Translation initiation factor IF2/IF5, zinc-binding	Interproscan
IPR045196	Family	Translation initiation factor IF2/IF5	Interproscan
IPR019273	Domain	Lunapark domain	Interproscan
IPR040115	Family	Lunapark family	Interproscan
IPR013563	Domain	Oligopeptide/dipeptide ABC transporter, C-terminal	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR050319	Family	ABC Transporter ATP-Binding	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000008	Domain	C2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023	COLLAGEN ALPHA	Interproscan
PTHR12360	NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1	Interproscan
PTHR11707	L-ASPARAGINASE	Interproscan
PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	Interproscan
PTHR23001	EUKARYOTIC TRANSLATION INITIATION FACTOR	Interproscan
PTHR22166	ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK	Interproscan
PTHR43776	TRANSPORT ATP-BINDING PROTEIN	Interproscan
PTHR10024	SYNAPTOTAGMIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0030020	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004067	Molecular Function	asparaginase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0001731	Biological Process	formation of translation preinitiation complex	Interproscan
GO:0001732	Biological Process	formation of cytoplasmic translation initiation complex	Interproscan
GO:0005850	Cellular Component	eukaryotic translation initiation factor 2 complex	Interproscan
GO:0031369	Molecular Function	translation initiation factor binding	Interproscan
GO:0071782	Cellular Component	endoplasmic reticulum tubular network	Interproscan
GO:0071786	Biological Process	endoplasmic reticulum tubular network organization	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0015833	Biological Process	peptide transport	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000149	Molecular Function	SNARE binding	Interproscan
GO:0001786	Molecular Function	phosphatidylserine binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005544	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0014059	Biological Process	regulation of dopamine secretion	Interproscan
GO:0017156	Biological Process	calcium-ion regulated exocytosis	Interproscan
GO:0017158	Biological Process	regulation of calcium ion-dependent exocytosis	Interproscan
GO:0030276	Molecular Function	clathrin binding	Interproscan
GO:0070382	Cellular Component	exocytic vesicle	Interproscan
GO:0071277	Biological Process	cellular response to calcium ion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23292	LNPK; endoplasmic reticulum junction formation protein lunapark	-	Ubiquitin system	ko04121	deepkoala
			Pantothenate and CoA biosynthesis	ko00770	deepkoala
			Translation factors	ko03012	deepkoala
			Membrane trafficking	ko04131	deepkoala