Gene detail

Detailed information of g1351.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_044173102.1, conserved oligomeric Golgi complex subunit 4-like [Acropora millepora]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3MHG0	Conserved oligomeric Golgi complex subunit 4 OS=Bos taurus OX=9913 GN=COG4 PE=2 SV=1
Q8R1U1	Conserved oligomeric Golgi complex subunit 4 OS=Mus musculus OX=10090 GN=Cog4 PE=1 SV=1
Q5R7R6	Conserved oligomeric Golgi complex subunit 4 OS=Pongo abelii OX=9601 GN=COG4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000314 (this species only)
Orthogroup (gene family)	OG0000604 (this species only)
Orthogroup (gene family)	OG0002816 (this species only)
Orthogroup (gene family)	OG0003302 (this species only)
Orthogroup (gene family)	OG0004993 (this species only)
Orthogroup (gene family)	OG0007185 (this species only)
Orthogroup (gene family)	OG0013281 (this species only)
Orthogroup (gene family)	OG0024473 (this species only)
Orthogroup (gene family)	OG0025852 (this species only)
Orthogroup (gene family)	OG0080432 (this species only)
Orthogroup (gene family)	OG0171119 (this species only)
Orthogroup (gene family)	OG0171819 (this species only)
Orthogroup (gene family)	OG0173003 (this species only)
Orthogroup (gene family)	OG0173880 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20806 all species →	Integrin_A_Ig_3	Integrin alpha Ig-like domain 3	Domain	Interproscan
PF20805 all species →	Integrin_A_Ig_2	Integrin alpha Ig-like domain 2	Domain	Interproscan
PF20662 all species →	COG4_C	Conserved oligomeric Golgi complex subunit 4, C-terminal	Repeat	Interproscan
PF08318 all species →	COG4_m	COG4 transport protein, middle alpha-helical bundle	Repeat	Interproscan
PF00773 all species →	RNB	RNB domain	Domain	Interproscan
PF11799 all species →	IMS_C	impB/mucB/samB family C-terminal domain	Domain	Interproscan
PF00817 all species →	IMS	impB/mucB/samB family	Family	Interproscan
PF17876 all species →	CSD2	Cold shock domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF03151 all species →	TPT	Triose-phosphate Transporter family	Family	Interproscan
PF02176 all species →	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF21355 all species →	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032695 all species →	Homologous_superfamily	Integrin domain superfamily	Interproscan
IPR048286 all species →	Domain	Integrin alpha, third immunoglobulin-like domain	Interproscan
IPR048285 all species →	Domain	Integrin alpha, second immunoglobulin-like domain	Interproscan
IPR048684 all species →	Domain	Conserved oligomeric Golgi complex subunit 4, C-terminal	Interproscan
IPR048682 all species →	Family	Conserved oligomeric Golgi complex subunit 4	Interproscan
IPR013167 all species →	Domain	COG4 transport protein, middle alpha-helical bundle	Interproscan
IPR022880 all species →	Family	DNA polymerase IV	Interproscan
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR001900 all species →	Domain	Ribonuclease II/R	Interproscan
IPR036775 all species →	Homologous_superfamily	DNA polymerase, Y-family, little finger domain superfamily	Interproscan
IPR001126 all species →	Domain	UmuC domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR017961 all species →	Domain	DNA polymerase, Y-family, little finger domain	Interproscan
IPR004476 all species →	Family	Ribonuclease II/ribonuclease R	Interproscan
IPR050180 all species →	Family	RNR Ribonuclease	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR011805 all species →	Family	Ribonuclease R	Interproscan
IPR040476 all species →	Domain	RNase II/RNase R, cold shock domain	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050186 all species →	Family	Triose Phosphate/Phosphate Translocator	Interproscan
IPR004853 all species →	Domain	Sugar phosphate transporter domain	Interproscan
IPR001293 all species →	Domain	Zinc finger, TRAF-type	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan
IPR049342 all species →	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23220 all species →	INTEGRIN ALPHA	Interproscan
PTHR24016 all species →	CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4	Interproscan
PTHR23355 all species →	RIBONUCLEASE	Interproscan
PTHR11132 all species →	SOLUTE CARRIER FAMILY 35	Interproscan
PTHR10131 all species →	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229 all species →	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0008305 all species →	Cellular Component	integrin complex	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0033627 all species →	Biological Process	cell adhesion mediated by integrin	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0017119 all species →	Cellular Component	Golgi transport complex	Interproscan
GO:0048213 all species →	Biological Process	obsolete Golgi vesicle prefusion complex stabilization	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0016070 all species →	Biological Process	RNA metabolic process	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0015297 all species →	Molecular Function	antiporter activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0033209 all species →	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534 all species →	Biological Process	protein K63-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09848	TRAF4; TNF receptor-associated factor 4	-	Small cell lung cancer	ko05222	deepkoala
K15281	SLC35D1_2_3; solute carrier family 35, member D1/2/3	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.