Detailed information of g1351.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_044173102.1, conserved oligomeric Golgi complex subunit 4-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q3MHG0Conserved oligomeric Golgi complex subunit 4 OS=Bos taurus OX=9913 GN=COG4 PE=2 SV=1
Q8R1U1Conserved oligomeric Golgi complex subunit 4 OS=Mus musculus OX=10090 GN=Cog4 PE=1 SV=1
Q5R7R6Conserved oligomeric Golgi complex subunit 4 OS=Pongo abelii OX=9601 GN=COG4 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20806Integrin_A_Ig_3Integrin alpha Ig-like domain 3DomainInterproscan
PF20805Integrin_A_Ig_2Integrin alpha Ig-like domain 2DomainInterproscan
PF20662COG4_CConserved oligomeric Golgi complex subunit 4, C-terminalRepeatInterproscan
PF08318COG4_mCOG4 transport protein, middle alpha-helical bundleRepeatInterproscan
PF00773RNBRNB domainDomainInterproscan
PF11799IMS_CimpB/mucB/samB family C-terminal domainDomainInterproscan
PF00817IMSimpB/mucB/samB familyFamilyInterproscan
PF17876CSD2Cold shock domainDomainInterproscan
PF00041fn3Fibronectin type III domainDomainInterproscan
PF03151TPTTriose-phosphate Transporter familyFamilyInterproscan
PF02176zf-TRAFTRAF-type zinc fingerFamilyInterproscan
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF21355TRAF-mep_MATHTRAF/meprin, MATH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032695Homologous_superfamilyIntegrin domain superfamilyInterproscan
IPR048286DomainIntegrin alpha, third immunoglobulin-like domainInterproscan
IPR048285DomainIntegrin alpha, second immunoglobulin-like domainInterproscan
IPR048684DomainConserved oligomeric Golgi complex subunit 4, C-terminalInterproscan
IPR048682FamilyConserved oligomeric Golgi complex subunit 4Interproscan
IPR013167DomainCOG4 transport protein, middle alpha-helical bundleInterproscan
IPR022880FamilyDNA polymerase IVInterproscan
IPR003029DomainS1 domainInterproscan
IPR001900DomainRibonuclease II/RInterproscan
IPR036775Homologous_superfamilyDNA polymerase, Y-family, little finger domain superfamilyInterproscan
IPR001126DomainUmuC domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR017961DomainDNA polymerase, Y-family, little finger domainInterproscan
IPR004476FamilyRibonuclease II/ribonuclease RInterproscan
IPR050180FamilyRNR RibonucleaseInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR011805FamilyRibonuclease RInterproscan
IPR040476DomainRNase II/RNase R, cold shock domainInterproscan
IPR016186Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR050186FamilyTriose Phosphate/Phosphate TranslocatorInterproscan
IPR004853DomainSugar phosphate transporter domainInterproscan
IPR001293DomainZinc finger, TRAF-typeInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR002083DomainMATH/TRAF domainInterproscan
IPR049342DomainTRAF1-6/MEP1A/B-like, MATH domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR008974Homologous_superfamilyTRAF-likeInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23220INTEGRIN ALPHAInterproscan
PTHR24016CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4Interproscan
PTHR23355RIBONUCLEASEInterproscan
PTHR11132SOLUTE CARRIER FAMILY 35Interproscan
PTHR10131TNF RECEPTOR ASSOCIATED FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005178Molecular Functionintegrin bindingInterproscan
GO:0007160Biological Processcell-matrix adhesionInterproscan
GO:0007229Biological Processintegrin-mediated signaling pathwayInterproscan
GO:0008305Cellular Componentintegrin complexInterproscan
GO:0009897Cellular Componentexternal side of plasma membraneInterproscan
GO:0033627Biological Processcell adhesion mediated by integrinInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0006890Biological Processretrograde vesicle-mediated transport, Golgi to endoplasmic reticulumInterproscan
GO:0007030Biological ProcessGolgi organizationInterproscan
GO:0017119Cellular ComponentGolgi transport complexInterproscan
GO:0048213Biological Processobsolete Golgi vesicle prefusion complex stabilizationInterproscan
GO:0003887Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004540Molecular FunctionRNA nuclease activityInterproscan
GO:0003684Molecular Functiondamaged DNA bindingInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0016070Biological ProcessRNA metabolic processInterproscan
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0004518Molecular Functionnuclease activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005794Cellular ComponentGolgi apparatusInterproscan
GO:0015297Molecular Functionantiporter activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0033209Biological Processtumor necrosis factor-mediated signaling pathwayInterproscan
GO:0070534Biological Processprotein K63-linked ubiquitinationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09848TRAF4; TNF receptor-associated factor 4-Transportersko02000deepkoala
Small cell lung cancerko05222deepkoala

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