Gene detail

Detailed information of g1356.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: GFU30528.1, sarcosine dehydrogenase, mitochondrial [Trichonephila clavipes]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q64380	Sarcosine dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Sardh PE=1 SV=2
Q9UL12	Sarcosine dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=SARDH PE=1 SV=1
Q99LB7	Sarcosine dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Sardh PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000058 (this species only)
Orthogroup (gene family)	OG0000767 (this species only)
Orthogroup (gene family)	OG0001359 (this species only)
Orthogroup (gene family)	OG0002281 (this species only)
Orthogroup (gene family)	OG0002799 (this species only)
Orthogroup (gene family)	OG0003110 (this species only)
Orthogroup (gene family)	OG0005529 (this species only)
Orthogroup (gene family)	OG0006944 (this species only)
Orthogroup (gene family)	OG0007138 (this species only)
Orthogroup (gene family)	OG0012989 (this species only)
Orthogroup (gene family)	OG0017771 (this species only)
Orthogroup (gene family)	OG0041301 (this species only)
Orthogroup (gene family)	OG0171984 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01565 all species →	FAD_binding_4	FAD binding domain	Domain	Interproscan
PF01266 all species →	DAO	FAD dependent oxidoreductase	Domain	Interproscan
PF00878 all species →	CIMR	Cation-independent mannose-6-phosphate receptor repeat	Family	Interproscan
PF09588 all species →	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00619 all species →	CARD	Caspase recruitment domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF08502 all species →	LeuA_dimer	LeuA allosteric (dimerisation) domain	Domain	Interproscan
PF00682 all species →	HMGL-like	HMGL-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036318 all species →	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR016167 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 1	Interproscan
IPR016166 all species →	Domain	FAD-binding domain, PCMH-type	Interproscan
IPR006094 all species →	Domain	FAD linked oxidase, N-terminal	Interproscan
IPR016169 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan
IPR050416 all species →	Family	FAD-linked Oxidoreductases in Biosynthetic Pathways	Interproscan
IPR006076 all species →	Domain	FAD dependent oxidoreductase	Interproscan
IPR009011 all species →	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR044865 all species →	Domain	MRH domain	Interproscan
IPR000479 all species →	Repeat	Cation-independent mannose-6-phosphate receptor repeat	Interproscan
IPR019080 all species →	Domain	YqaJ viral recombinase	Interproscan
IPR011604 all species →	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036373 all species →	Homologous_superfamily	Large ribosomal subunit protein bL17 superfamily	Interproscan
IPR005550 all species →	Family	Kinetochore protein Ndc80	Interproscan
IPR033238 all species →	Family	B-cell lymphoma/leukemia 10/E10	Interproscan
IPR001315 all species →	Domain	CARD domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR037590 all species →	Family	GATOR2 complex protein WDR24	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036230 all species →	Homologous_superfamily	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily	Interproscan
IPR000891 all species →	Domain	Pyruvate carboxyltransferase	Interproscan
IPR002034 all species →	Conserved_site	Alpha-isopropylmalate/homocitrate synthase, conserved site	Interproscan
IPR005668 all species →	Family	2-isopropylmalate synthase	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR013709 all species →	Domain	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain	Interproscan
IPR039371 all species →	Domain	LeuA, N-terminal catalytic TIM barrel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42973 all species →	BINDING OXIDOREDUCTASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G17690)-RELATED	Interproscan
PTHR15071 all species →	MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR10643 all species →	KINETOCHORE PROTEIN NDC80	Interproscan
PTHR34920 all species →	B-CELL LYMPHOMA/LEUKEMIA 10	Interproscan
PTHR46200 all species →	GATOR COMPLEX PROTEIN WDR24	Interproscan
PTHR46911 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan
GO:0005537 all species →	Molecular Function	D-mannose binding	Interproscan
GO:0007041 all species →	Biological Process	lysosomal transport	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0031262 all species →	Cellular Component	Ndc80 complex	Interproscan
GO:0051315 all species →	Biological Process	attachment of mitotic spindle microtubules to kinetochore	Interproscan
GO:0002250 all species →	Biological Process	adaptive immune response	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006915 all species →	Biological Process	apoptotic process	Interproscan
GO:0007249 all species →	Biological Process	canonical NF-kappaB signal transduction	Interproscan
GO:0019209 all species →	Molecular Function	kinase activator activity	Interproscan
GO:0032449 all species →	Cellular Component	CBM complex	Interproscan
GO:0043422 all species →	Molecular Function	protein kinase B binding	Interproscan
GO:0051059 all species →	Molecular Function	NF-kappaB binding	Interproscan
GO:0051092 all species →	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan
GO:2001238 all species →	Biological Process	positive regulation of extrinsic apoptotic signaling pathway	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0005774 all species →	Cellular Component	vacuolar membrane	Interproscan
GO:0016239 all species →	Biological Process	positive regulation of macroautophagy	Interproscan
GO:0032008 all species →	Biological Process	positive regulation of TOR signaling	Interproscan
GO:0034198 all species →	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0061700 all species →	Cellular Component	GATOR2 complex	Interproscan
GO:1904263 all species →	Biological Process	positive regulation of TORC1 signaling	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0019752 all species →	Biological Process	carboxylic acid metabolic process	Interproscan
GO:0046912 all species →	Molecular Function	acyltransferase activity, acyl groups converted into alkyl on transfer	Interproscan
GO:0003852 all species →	Molecular Function	2-isopropylmalate synthase activity	Interproscan
GO:0009098 all species →	Biological Process	L-leucine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01649	leuA, IMS; 2-isopropylmalate synthase	EC:2.3.3.13	Valine, leucine and isoleucine biosynthesis	ko00290	deepkoala
K07368	BCL10; B-cell CLL/lymphoma 10	-	Tuberculosis	ko05152	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.