Gene detail

Detailed information of g1357.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: KXJ27256.1, ATP-dependent DNA helicase PIF1 [Exaiptasia diaphana]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P43090	5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Opsanus tau OX=8068 GN=alas2 PE=2 SV=1
Q3ZC31	5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Bos taurus OX=9913 GN=ALAS2 PE=2 SV=1
Q9XT75	5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Delphinapterus leucas OX=9749 GN=ALAS2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000001 (this species only)
Orthogroup (gene family)	OG0000005 (this species only)
Orthogroup (gene family)	OG0000058 (this species only)
Orthogroup (gene family)	OG0000220 (this species only)
Orthogroup (gene family)	OG0000740 (this species only)
Orthogroup (gene family)	OG0000773 (this species only)
Orthogroup (gene family)	OG0001741 (this species only)
Orthogroup (gene family)	OG0003095 (this species only)
Orthogroup (gene family)	OG0004311 (this species only)
Orthogroup (gene family)	OG0007445 (this species only)
Orthogroup (gene family)	OG0008640 (this species only)
Orthogroup (gene family)	OG0017423 (this species only)
Orthogroup (gene family)	OG0172957 (this species only)
Orthogroup (gene family)	OG0173208 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF12455 all species →	Dynactin	Dynein associated protein	Family	Interproscan
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan
PF20833 all species →	RNase_E_G_Thio	RNase E/G, Thioredoxin-like domain	Domain	Interproscan
PF10150 all species →	RNase_E_G	Ribonuclease E/G family	Family	Interproscan
PF00155 all species →	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF02798 all species →	GST_N	Glutathione S-transferase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR037626 all species →	Family	Nucleoporin Nup37	Interproscan
IPR051227 all species →	Family	Chondroitin sulfate glycosyltransferase	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR022157 all species →	Domain	Dynein associated protein	Interproscan
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR048583 all species →	Domain	RNase E/G, thioredoxin-like domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR004659 all species →	Family	Ribonuclease E/G	Interproscan
IPR019307 all species →	Family	RNA-binding protein AU-1/Ribonuclease E/G	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR004839 all species →	Domain	Aminotransferase, class I/classII	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR001917 all species →	Binding_site	Aminotransferase, class-II, pyridoxal-phosphate binding site	Interproscan
IPR050087 all species →	Family	8-amino-7-oxononanoate synthase class-II	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR004045 all species →	Domain	Glutathione S-transferase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22806 all species →	NUCLEOPORIN NUP37 P37 -RELATED	Interproscan
PTHR12369 all species →	CHONDROITIN SYNTHASE	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR47501 all species →	TRANSPOSASE-RELATED	Interproscan
PTHR33776 all species →	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR18916 all species →	DYNACTIN 1-RELATED MICROTUBULE-BINDING	Interproscan
PTHR30001 all species →	RIBONUCLEASE	Interproscan
PTHR13693 all species →	CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0031080 all species →	Cellular Component	nuclear pore outer ring	Interproscan
GO:0008376 all species →	Molecular Function	acetylgalactosaminyltransferase activity	Interproscan
GO:0030206 all species →	Biological Process	chondroitin sulfate biosynthetic process	Interproscan
GO:0047238 all species →	Molecular Function	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0035371 all species →	Cellular Component	microtubule plus-end	Interproscan
GO:0051010 all species →	Molecular Function	microtubule plus-end binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan
GO:0003870 all species →	Molecular Function	5-aminolevulinate synthase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006783 all species →	Biological Process	heme biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08301	rng, cafA; ribonuclease G	EC:3.1.26.-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.