Gene detail

Detailed information of g136.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_038564906.1, 15-hydroxyprostaglandin dehydrogenase [NAD(+)]-like [Micropterus salmoides]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70684	15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Cavia porcellus OX=10141 GN=HPGD PE=2 SV=1
Q8VCC1	15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Mus musculus OX=10090 GN=Hpgd PE=1 SV=1
P15428	15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Homo sapiens OX=9606 GN=HPGD PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000431 (this species only)
Orthogroup (gene family)	OG0000494 (this species only)
Orthogroup (gene family)	OG0001214 (this species only)
Orthogroup (gene family)	OG0001390 (this species only)
Orthogroup (gene family)	OG0001893 (this species only)
Orthogroup (gene family)	OG0005521 (this species only)
Orthogroup (gene family)	OG0012912 (this species only)
Orthogroup (gene family)	OG0016718 (this species only)
Orthogroup (gene family)	OG0032563 (this species only)
Orthogroup (gene family)	OG0032571 (this species only)
Orthogroup (gene family)	OG0057432 (this species only)
Orthogroup (gene family)	OG0080407 (this species only)
Orthogroup (gene family)	OG0172532 (this species only)
Orthogroup (gene family)	OG0173841 (this species only)
Orthogroup (gene family)	OG0174097 (this species only)
Transcription factor family	MYB · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04666 all species →	Glyco_transf_54	N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region	Family	Interproscan
PF18360 all species →	hnRNP_Q_AcD	Heterogeneous nuclear ribonucleoprotein Q acidic domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF18086 all species →	PPIP5K2_N	Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain	Domain	Interproscan
PF00328 all species →	His_Phos_2	Histidine phosphatase superfamily (branch 2)	Family	Interproscan
PF08443 all species →	RimK	RimK-like ATP-grasp domain	Domain	Interproscan
PF00043 all species →	GST_C	Glutathione S-transferase, C-terminal domain	Domain	Interproscan
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006759 all species →	Family	Glycosyl transferase family 54	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR041337 all species →	Domain	Heterogeneous nuclear ribonucleoprotein Q acidic domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR006535 all species →	Family	HnRNP R/Q splicing factor	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR020904 all species →	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR050216 all species →	Family	Leucine-rich repeat domain-containing protein	Interproscan
IPR040557 all species →	Domain	VIP1, N-terminal	Interproscan
IPR029033 all species →	Homologous_superfamily	Histidine phosphatase superfamily	Interproscan
IPR000560 all species →	Family	Histidine phosphatase superfamily, clade-2	Interproscan
IPR037446 all species →	Family	Histidine acid phosphatase, VIP1 family	Interproscan
IPR013651 all species →	Domain	ATP-grasp fold, RimK-type	Interproscan
IPR004046 all species →	Domain	Glutathione S-transferase, C-terminal	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR052035 all species →	Family	Zinc finger BED domain-containing	Interproscan
IPR036282 all species →	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12062 all species →	N-ACETYLGLUCOSAMINYLTRANSFERASE VI	Interproscan
PTHR21245 all species →	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	Interproscan
PTHR23159 all species →	CENTROSOMAL PROTEIN 2	Interproscan
PTHR48051 all species →	-	Interproscan
PTHR12750 all species →	DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE	Interproscan
PTHR46481 all species →	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0008375 all species →	Molecular Function	acetylglucosaminyltransferase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0000828 all species →	Molecular Function	inositol hexakisphosphate kinase activity	Interproscan
GO:0000829 all species →	Molecular Function	diphosphoinositol pentakisphosphate kinase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006020 all species →	Biological Process	inositol metabolic process	Interproscan
GO:0032958 all species →	Biological Process	inositol phosphate biosynthetic process	Interproscan
GO:0033857 all species →	Molecular Function	5-diphosphoinositol pentakisphosphate 1-kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09609	ADAMTS20; a disintegrin and metalloproteinase with thrombospondin motifs 20	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala
K13024	PPIP5K, VIP; inositol-hexakisphosphate/diphosphoinositol-pentakisphosphate 1-kinase	EC:2.7.4.24	Phosphatidylinositol signaling system	ko04070	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.