Detailed information of g1360.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_052543308.1, actin-like protein 6A [Tympanuchus pallidicinctus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O96019Actin-like protein 6A OS=Homo sapiens OX=9606 GN=ACTL6A PE=1 SV=1
Q9Z2N8Actin-like protein 6A OS=Mus musculus OX=10090 GN=Actl6a PE=1 SV=2
Q4R333Actin-like protein 6A OS=Macaca fascicularis OX=9541 GN=ACTL6A PE=2 SV=1
Gene familySubfamily
Transcription Factors FamilyHomeobox

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046HomeodomainHomeodomainDomainInterproscan
PF00022ActinActinFamilyInterproscan
PF02475Met_10Met-10+ like-proteinFamilyInterproscan
PF01343Peptidase_S49Peptidase family S49FamilyInterproscan
PF08496Peptidase_S49_NPeptidase family S49 N-terminalFamilyInterproscan
PF00125HistoneCore histone H2A/H2B/H3/H4DomainInterproscan
PF13621Cupin_8Cupin-like domainDomainInterproscan
PF01607CBM_14Chitin binding Peritrophin-A domainDomainInterproscan
PF15711ILEIInterleukin-like EMT inducerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001356DomainHomeobox domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR050803FamilyAbd-B homeobox transcription factorInterproscan
IPR015797Homologous_superfamilyNUDIX hydrolase-like domain superfamilyInterproscan
IPR004000FamilyActin familyInterproscan
IPR043129Homologous_superfamilyATPase, nucleotide binding domainInterproscan
IPR030382DomainSAM-dependent methyltransferase TRM5/TYW2-typeInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR002142DomainPeptidase S49Interproscan
IPR047272DomainSignal peptide peptidase A-like, C-terminalInterproscan
IPR013703DomainPeptidase S49, N-terminal proteobacteriaInterproscan
IPR029045Homologous_superfamilyClpP/crotonase-like domain superfamilyInterproscan
IPR000164FamilyHistone H3/CENP-AInterproscan
IPR007125DomainHistone H2A/H2B/H3Interproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR003347DomainJmjC domainInterproscan
IPR041667DomainCupin-like domain 8Interproscan
IPR002557DomainChitin binding domainInterproscan
IPR039477DomainILEI/PANDER domainInterproscan
IPR039220FamilyFAM3 familyInterproscan
IPR036508Homologous_superfamilyChitin binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45970AGAP004664-PAInterproscan
PTHR11937ACTINInterproscan
PTHR42987PEPTIDASE S49Interproscan
PTHR11426HISTONE H3Interproscan
PTHR21974UNCHARACTERIZEDInterproscan
PTHR12461HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATEDInterproscan
PTHR14592UNCHARACTERIZED FAM3Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0009952Biological Processanterior/posterior pattern specificationInterproscan
GO:0009954Biological Processproximal/distal pattern formationInterproscan
GO:0048704Biological Processembryonic skeletal system morphogenesisInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0007399Biological Processnervous system developmentInterproscan
GO:0016514Cellular ComponentSWI/SNF complexInterproscan
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complexInterproscan
GO:0043044Biological Processchromatin remodelingInterproscan
GO:0043967Biological Processobsolete histone H4 acetylationInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008233Molecular Functionpeptidase activityInterproscan
GO:0004252Molecular Functionserine-type endopeptidase activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0005929Cellular ComponentciliumInterproscan
GO:0016706Molecular Function2-oxoglutarate-dependent dioxygenase activityInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0008061Molecular Functionchitin bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11253H3; histone H3-Peptidases and inhibitorsko01002deepkoala
Exosomeko04147deepkoala

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