Detailed information of g1361.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_044167768.1, RNA-binding protein 5-like isoform X2 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
A0JMV4RNA-binding protein 5-A OS=Xenopus laevis OX=8355 GN=rbm5-a PE=2 SV=1
B2GV05RNA-binding protein 5 OS=Rattus norvegicus OX=10116 GN=Rbm5 PE=1 SV=1
Q91YE7RNA-binding protein 5 OS=Mus musculus OX=10090 GN=Rbm5 PE=1 SV=1
Gene familySubfamily
Transcription Factors Familyzf-CCCH

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06465DUF1087CHD subfamily II, DUF1087DomainInterproscan
PF08074CHDCT2CHDCT2 (NUC038) domainDomainInterproscan
PF07855ATG101Autophagy-related protein 101FamilyInterproscan
PF14608zf-CCCH_2RNA-binding, Nab2-type zinc fingerDomainInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF02493MORNMORN repeatRepeatInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF17780OCREOCRE domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009463DomainDomain of unknown function DUF1087Interproscan
IPR012957DomainCHD, C-terminal 2Interproscan
IPR012445FamilyAutophagy-related protein 101Interproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR045124FamilyProtein suppressor of sable-likeInterproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR051166FamilyThreonine SynthaseInterproscan
IPR036052Homologous_superfamilyTryptophan synthase beta chain-like, PALP domain superfamilyInterproscan
IPR046341Homologous_superfamilySET domain superfamilyInterproscan
IPR003409RepeatMORN repeatInterproscan
IPR017155FamilyHistone-lysine N-methyltransferase SETD7Interproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR041591DomainOCRE domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR34615PX DOMAIN-CONTAINING PROTEINInterproscan
PTHR45623CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATEDInterproscan
PTHR13292UNCHARACTERIZEDInterproscan
PTHR13119ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIInterproscan
PTHR15722IFT140/172-RELATEDInterproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan
PTHR42690THREONINE SYNTHASE FAMILY MEMBERInterproscan
PTHR46820HISTONE-LYSINE N-METHYLTRANSFERASE SETD7Interproscan
PTHR13948RNA-BINDING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0000785Cellular ComponentchromatinInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan
GO:0000045Biological Processautophagosome assemblyInterproscan
GO:0000407Cellular Componentphagophore assembly siteInterproscan
GO:0006914Biological ProcessautophagyInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0045892Biological Processnegative regulation of DNA-templated transcriptionInterproscan
GO:0005930Cellular ComponentaxonemeInterproscan
GO:0030991Cellular Componentintraciliary transport particle AInterproscan
GO:0035721Biological Processintraciliary retrograde transportInterproscan
GO:0036064Cellular Componentciliary basal bodyInterproscan
GO:0042073Biological Processintraciliary transportInterproscan
GO:0004795Molecular Functionthreonine synthase activityInterproscan
GO:0009088Biological Processthreonine biosynthetic processInterproscan
GO:0005694Cellular ComponentchromosomeInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0016279Molecular Functionprotein-lysine N-methyltransferase activityInterproscan
GO:0140945Molecular Functionhistone H3K4 monomethyltransferase activityInterproscan
GO:0018024Molecular Functionobsolete histone lysine N-methyltransferase activityInterproscan
GO:0018026Biological Processpeptidyl-lysine monomethylationInterproscan
GO:0070828Biological Processheterochromatin organizationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan

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