Detailed information of g1367.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH3163720.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6PHU5Sortilin OS=Mus musculus OX=10090 GN=Sort1 PE=1 SV=1
O54861Sortilin OS=Rattus norvegicus OX=10116 GN=Sort1 PE=1 SV=3
Q99523Sortilin OS=Homo sapiens OX=9606 GN=SORT1 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan
PF11573Med23Mediator complex subunit 23FamilyInterproscan
PF09726MacoilinMacoilin familyFamilyInterproscan
PF02752Arrestin_CArrestin (or S-antigen), C-terminal domainDomainInterproscan
PF15902Sortilin-Vps10Sortilin, neurotensin receptor 3,RepeatInterproscan
PF15901Sortilin_CSortilin, neurotensin receptor 3, C-terminalDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051336FamilyRho GTPase-activating Guanine Nucleotide Exchange FactorsInterproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR050410FamilyCCR4/nocturin mRNA turnover and transcriptionInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR021629FamilyMediator complex, subunit Med23Interproscan
IPR019130FamilyMacoilinInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR011022DomainArrestin C-terminal-like domainInterproscan
IPR014752Homologous_superfamilyArrestin-like, C-terminalInterproscan
IPR006581DomainVPS10Interproscan
IPR031778DomainSortilin, N-terminalInterproscan
IPR050310FamilyVPS10-related sortilin family receptorsInterproscan
IPR031777DomainSortilin, C-terminalInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22826RHO GUANINE EXCHANGE FACTOR-RELATEDInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR12121CARBON CATABOLITE REPRESSOR PROTEIN 4Interproscan
PTHR12691MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23Interproscan
PTHR47464MACOILINInterproscan
PTHR12106SORTILIN RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007411Biological Processaxon guidanceInterproscan
GO:0019898Cellular Componentextrinsic component of membraneInterproscan
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0000289Biological Processnuclear-transcribed mRNA poly(A) tail shorteningInterproscan
GO:0004535Molecular Functionpoly(A)-specific ribonuclease activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0030014Cellular ComponentCCR4-NOT complexInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0010628Biological Processpositive regulation of gene expressionInterproscan
GO:0016592Cellular Componentmediator complexInterproscan
GO:0023041Biological Processneuronal signal transductionInterproscan
GO:0030867Cellular Componentrough endoplasmic reticulum membraneInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005794Cellular ComponentGolgi apparatusInterproscan
GO:0006892Biological Processpost-Golgi vesicle-mediated transportInterproscan
GO:0006895Biological ProcessGolgi to endosome transportInterproscan
GO:0006897Biological ProcessendocytosisInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0016050Biological Processvesicle organizationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12603CNOT6, CCR4; CCR4-NOT transcription complex subunit 6EC:3.1.13.4
Neurotrophin signaling pathwayko04722deepkoala
Messenger RNA biogenesisko03019deepkoala

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