Gene detail

Detailed information of g13680.t1 in Montipora capitata

Genomic Location: Sc0000477:47623...67442
NR annotation: XP_029199693.2, LOW QUALITY PROTEIN: multiple C2 and transmembrane domain-containing protein 1-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g13680.t1

atgtcggacgaagatgtgcgagacacagacacagggaagaagaaaggtttcttctccagcctcaagcgctcgaaatccaaaggaggacgtgctaagggtggtgcggatgaagacggggcattaccccttccttctcccactgaggccggagcggtaaccgaatgccccgctcaagatgtttcaccaggctcattggctggtgatgttgccaaggcggggaaatgtgcgttctttgctctcgaagtggagctaaaagacggcaaggatttggcagctcgggacaaaacaggcactagtgacccctatgtgaaatttaaatctgatggaaagcagatttataagagcaaaacagtgcctaagaacttgaaccctcaatggaatgagaaattctgtgtccctattgaggatataaccgttcctctgatcttgaaagtgctggactttgatcatattggcaatgatgatcctatgggacgagctgttgtggacctgtcacagcttgaagtggagaagccaacagaaatgattcttgatcttcaagaccctgatggtggaagtgacaagttgggtcaaatctgtgctgtgttcactgtccagccaaagaactttgaggacaggcaagagattgctaaaagagcgtcgacgtcaaagaaaggtcaaccacccaaagaaccgggcaagggacagctgtgggatggactggtttccattatacttgttgagggcaagaagatgatacccatggatgattcaggtcttagtgatccttattgccgttttcgactgggaaatgaaaagtacaaaacaaaagcctgcaaagagacgttgaatccacagtggaaggaacagtttgatttgaagatttacccagactcacctatgatgctggaagtcacagtctgggacagagacataaggaaggatgaattcatgggaaggtgtcaaatcgacttgtcaacgcttgcacgggaaaagtctcataagatcgaagctgcactcgaggataatgcaggcattgtggttatgcatctgtcaatcaccggattggatgcgcctggctgtgaatcagatttgaatacatttgtagagaaaccgggaaaacgagaggaaataaccaaacagtacaccgtgaagaacacaggaaagaagataaaagaaattggatggctgcaggtgaaacttcatcgtgcagttgggttggcatcagcggacatcggtggcactagtgatccatttgcggttatagaactcaacaatcagcggctagtaacaccaactttgtacaagactcttaacccggcttgggacaaagtatatgaaatgacagtgttcgatattcatgatgtacttgacgttactgtgtttgatgaagacaagagaggagccccagagtttctaggtcgagttgtcattccgctgctgcaggttacccccggtgagaagcgcttgtaccagttgaaagacaagagcctggaacgaagggctaaaggtcatcttatcctgactcttgatgtggagtataatccaatacgagctgctgttaggactgtcaaccccagagaccccaagatcatgtttgaacccgcgaagtttaagagagcgttactgcagcgtaacattgatcgtgtgaataagcttgttgcaagtctggtatcgactggggcatttgtccaatcgctgttcacttggcagtacaagttcaggagcgcttttgcttttgctatttacataatgttatgcctgaattttgacttctacatcatacctttgacactgctgctgacatttctcaagcagtatgtgatgtgcatgctgcttgctgacaaaaacgtgaacccagaggaacaggaaggagctccagtggatgacgatgacgacttagaagatgaggaggaagataaagggaaaaaaggggacaaaggtaaaagttttaaagagaagattgcagcgctaacgtccatttgtcagacggtgcaaaacgccctggacatggtggcttccatgggagaaagagttaaaaagtaa

Transcript

g13680.t1

ATGTCGGACGAAGATGTGCGAGACACAGACACAGGGAAGAAGAAAGGTTTCTTCTCCAGCCTCAAGCGCTCGAAATCCAAAGGAGGACGTGCTAAGGGTGGTGCGGATGAAGACGGGGCATTACCCCTTCCTTCTCCCACTGAGGCCGGAGCGGTAACCGAATGCCCCGCTCAAGATGTTTCACCAGGCTCATTGGCTGGTGATGTTGCCAAGGCGGGGAAATGTGCGTTCTTTGCTCTCGAAGTGGAGCTAAAAGACGGCAAGGATTTGGCAGCTCGGGACAAAACAGGCACTAGTGACCCCTATGTGAAATTTAAATCTGATGGAAAGCAGATTTATAAGAGCAAAACAGTGCCTAAGAACTTGAACCCTCAATGGAATGAGAAATTCTGTGTCCCTATTGAGGATATAACCGTTCCTCTGATCTTGAAAGTGCTGGACTTTGATCATATTGGCAATGATGATCCTATGGGACGAGCTGTTGTGGACCTGTCACAGCTTGAAGTGGAGAAGCCAACAGAAATGATTCTTGATCTTCAAGACCCTGATGGTGGAAGTGACAAGTTGGGTCAAATCTGTGCTGTGTTCACTGTCCAGCCAAAGAACTTTGAGGACAGGCAAGAGATTGCTAAAAGAGCGTCGACGTCAAAGAAAGGTCAACCACCCAAAGAACCGGGCAAGGGACAGCTGTGGGATGGACTGGTTTCCATTATACTTGTTGAGGGCAAGAAGATGATACCCATGGATGATTCAGGTCTTAGTGATCCTTATTGCCGTTTTCGACTGGGAAATGAaaagtacaaaacaaaagcctgCAAAGAGACGTTGAATCCACAGTGGAAGGAACAGTTTGATTTGAAGATTTACCCAGACTCACCTATGATGCTGGAAGTCACAGTCTGGGACAGAGACATAAGGAAGGATGAATTCATGGGAAGGTGTCAAATCGACTTGTCAACGCTTGCACGGGAAAAGTCtcataagatcgaagctgcactcGAGGATAATGCAGGCATTGTGGTTATGCATCTGTCAATCACCGGATTGGATGCGCCTGGCTGTGAATCAGATTTGAATACATTTGTAGAGAAACCGGGAAAACGAGAGGAAATAACCAAACAGTACACCGTGAAGAACACAGGAAAGAAGATAAAAGAAATTGGATGGCTGCAGGTGAAACTTCATCGTGCAGTTGGGTTGGCATCAGCGGACATCGGTGGCACTAGTGATCCATTTGCGGTTATAGAACTCAACAATCAGCGGCTAGTAACACCAACTTTGTACAAGACTCTTAACCCGGCTTGGGACAAAGTATATGAAATGACAGTGTTCGATATTCATGATGTACTTGACGTTACTGTGTTTGATGAAGACAAGAGAGGAGCCCCAGAGTTTCTAGGTCGAGTTGTCATTCCGCTGCTGCAGGTTACCCCCGGTGAGAAGCGCTTGTACCAGTTGAAAGACAAGAGCCTGGAACGAAGGGCTAAAGGTCATCTTATCCTGACTCTTGATGTGGAGTATAATCCAATACGAGCTGCTGTTAGGACTGTCAACCCCAGAGACCCCAAGATCATGTTTGAACCCGCGAAGTTTAAGAGAGCGTTACTGCAGCGTAACATTGATCGTGTGAATAAGCTTGTTGCAAGTCTGGTATCGACTGGGGCATTTGTCCAATCGCTGTTCACTTGGCAGTACAAGTTCAGGAGCGCTTTTGCTTTTGCTATTTACATAATGTTATGCCTGAATTTTGACTTCTACATCATACCTTTGACACTGCTGCTGACATTTCTCAAGCAGTATGTGATGTGCATGCTGCTTGCTGACAAAAACGTGAACCCAGAGGAACAGGAAGGAGCTCCAGTGGATGACGATGACGACTTAGAAGATGAGGAGGAAGATAAAGGGAAAAAAGGGGACAAAGGTAAAAGTTTTAAAGAGAAGATTGCAGCGCTAACGTCCATTTGTCAGACGGTGCAAAACGCCCTGGACATGGTGGCTTCCATGGGAGAAAGAGTTAAAAAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E9PV86	Multiple C2 and transmembrane domain-containing protein 1 OS=Mus musculus OX=10090 GN=Mctp1 PE=1 SV=1
D4ABL6	Multiple C2 and transmembrane domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Mctp1 PE=1 SV=4
Q6DN14	Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens OX=9606 GN=MCTP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002772 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45911 all species →	C2 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g13680.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g13680.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

475.1Max TPM

235.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	213.95	453.25
whole organisms · low pH treatment	15	15	253.18	423.37
whole organisms · extra low pH treatment pH treatment	12	12	250.42	475.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	453.25
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	443.23
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	358.70
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	358.41
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	349.01
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	330.88
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	309.15
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	290.32
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	276.25
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	268.00
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	204.49
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	195.98
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	181.92
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	165.78
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	67.66
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	65.21
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	62.85
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	33.97
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	31.15
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	25.95
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	20.85
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	423.37
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	379.93
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	378.78
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	375.40
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	362.39
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	359.02
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	290.74
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	289.29
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	234.91
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	223.14
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	188.32
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	146.19
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	50.79
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	49.40
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	45.97
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	475.14
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	450.65
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	342.00
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	331.48
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	325.14
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	286.93
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	268.02
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	185.43
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	168.41
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	60.70
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	57.14
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	53.97

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.