Gene detail

Detailed information of g1371.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_046839045.1, uncharacterized protein LOC124433328 [Xenia sp. Carnegie-2017]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
P97742	Carnitine O-palmitoyltransferase 1, liver isoform OS=Mus musculus OX=10090 GN=Cpt1a PE=1 SV=4
Q68Y62	Carnitine O-palmitoyltransferase 1, liver isoform OS=Equus caballus OX=9796 GN=CPT1A PE=2 SV=1
P32198	Carnitine O-palmitoyltransferase 1, liver isoform OS=Rattus norvegicus OX=10116 GN=Cpt1a PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00755	Carn_acyltransf	Choline/Carnitine o-acyltransferase	Family	Interproscan
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF00264	Tyrosinase	Common central domain of tyrosinase	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023213	Homologous_superfamily	Chloramphenicol acetyltransferase-like domain superfamily	Interproscan
IPR000542	Family	Acyltransferase ChoActase/COT/CPT	Interproscan
IPR039551	Domain	Choline/carnitine acyltransferase domain	Interproscan
IPR042231	Homologous_superfamily	Choline/Carnitine o-acyltransferase, domain 2	Interproscan
IPR050316	Family	Tyrosinase and Hemocyanin	Interproscan
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR002227	Domain	Tyrosinase copper-binding domain	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR008922	Homologous_superfamily	Di-copper centre-containing domain superfamily	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR050906	Family	Notch signaling pathway	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR050283	Family	E-box Binding Transcriptional Regulators	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR051514	Family	R-spondin domain-containing protein	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR006212	Repeat	Furin-like repeat	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22589	CARNITINE O-ACYLTRANSFERASE	Interproscan
PTHR11474	TYROSINASE FAMILY MEMBER	Interproscan
PTHR24044	NOTCH LIGAND FAMILY MEMBER	Interproscan
PTHR23349	BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST	Interproscan
PTHR46987	NEUROHYPOPHYSIAL HORMONES, N-TERMINAL DOMAIN CONTAINING PROTEIN	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004095	Molecular Function	carnitine O-palmitoyltransferase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0009437	Biological Process	carnitine metabolic process	Interproscan
GO:0016746	Molecular Function	acyltransferase activity	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005112	Molecular Function	Notch binding	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0032502	Biological Process	developmental process	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan