Gene detail

Detailed information of g1372.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: KAJ7393640.1, Ropporin-1-like protein [Desmophyllum pertusum]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V7T8	Ropporin-1-like protein OS=Xenopus laevis OX=8355 GN=ropn1l PE=2 SV=1
Q66IC9	Ropporin-1-like protein OS=Danio rerio OX=7955 GN=ropn1l PE=2 SV=1
Q9EQ00	Ropporin-1-like protein OS=Mus musculus OX=10090 GN=Ropn1l PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000233 (this species only)
Orthogroup (gene family)	OG0000296 (this species only)
Orthogroup (gene family)	OG0001024 (this species only)
Orthogroup (gene family)	OG0003118 (this species only)
Orthogroup (gene family)	OG0003793 (this species only)
Orthogroup (gene family)	OG0003807 (this species only)
Orthogroup (gene family)	OG0004014 (this species only)
Orthogroup (gene family)	OG0004373 (this species only)
Orthogroup (gene family)	OG0006370 (this species only)
Orthogroup (gene family)	OG0007401 (this species only)
Orthogroup (gene family)	OG0170827 (this species only)
Orthogroup (gene family)	OG0171693 (this species only)
Orthogroup (gene family)	OG0172726 (this species only)
Orthogroup (gene family)	OG0174112 (this species only)
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01467 all species →	CTP_transf_like	Cytidylyltransferase-like	Domain	Interproscan
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan
PF00201 all species →	UDPGT	UDP-glucoronosyl and UDP-glucosyl transferase	Family	Interproscan
PF04592 all species →	SelP_N	Selenoprotein P, N terminal region	Family	Interproscan
PF01869 all species →	BcrAD_BadFG	BadF/BadG/BcrA/BcrD ATPase family	Family	Interproscan
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF00264 all species →	Tyrosinase	Common central domain of tyrosinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR041723 all species →	Domain	CTP:phosphocholine cytidylyltransferase domain	Interproscan
IPR044608 all species →	Family	Ethanolamine-phosphate cytidylyltransferase	Interproscan
IPR004821 all species →	Domain	Cytidyltransferase-like domain	Interproscan
IPR047844 all species →	Domain	Ropporin, dimerization/docking domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR011016 all species →	Domain	Zinc finger, RING-CH-type	Interproscan
IPR039804 all species →	Domain	Listerin, zinc finger, RING-type	Interproscan
IPR039795 all species →	Family	E3 ubiquitin-protein ligase listerin	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR050271 all species →	Family	UDP-glycosyltransferase	Interproscan
IPR002213 all species →	Family	UDP-glucuronosyl/UDP-glucosyltransferase	Interproscan
IPR037941 all species →	Family	Selenoprotein P	Interproscan
IPR007671 all species →	Domain	Selenoprotein P, N-terminal	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR002731 all species →	Domain	ATPase, BadF/BadG/BcrA/BcrD type	Interproscan
IPR039758 all species →	Family	N-acetyl-D-glucosamine kinase NAGK-like	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR002227 all species →	Domain	Tyrosinase copper-binding domain	Interproscan
IPR050316 all species →	Family	Tyrosinase and Hemocyanin	Interproscan
IPR008922 all species →	Homologous_superfamily	Di-copper centre-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45780 all species →	ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE	Interproscan
PTHR14952 all species →	ROPPORIN-1-LIKE PROTEIN	Interproscan
PTHR12389 all species →	ZINC FINGER PROTEIN 294	Interproscan
PTHR48043 all species →	EG:EG0003.4 PROTEIN-RELATED	Interproscan
PTHR10105 all species →	SELENOPROTEIN P	Interproscan
PTHR12862 all species →	BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR11915 all species →	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan
PTHR11474 all species →	TYROSINASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004306 all species →	Molecular Function	ethanolamine-phosphate cytidylyltransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006646 all species →	Biological Process	phosphatidylethanolamine biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043023 all species →	Molecular Function	ribosomal large subunit binding	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0072344 all species →	Biological Process	rescue of stalled ribosome	Interproscan
GO:1990112 all species →	Cellular Component	RQC complex	Interproscan
GO:1990116 all species →	Biological Process	ribosome-associated ubiquitin-dependent protein catabolic process	Interproscan
GO:0008194 all species →	Molecular Function	UDP-glycosyltransferase activity	Interproscan
GO:0001887 all species →	Biological Process	selenium compound metabolic process	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0008430 all species →	Molecular Function	selenium binding	Interproscan
GO:0045127 all species →	Molecular Function	N-acetylglucosamine kinase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00884	NAGK, nagK; N-acetylglucosamine kinase	EC:2.7.1.59	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala
K00967	PCYT2; ethanolamine-phosphate cytidylyltransferase	EC:2.7.7.14	Phosphonate and phosphinate metabolism	ko00440	deepkoala
K25457	ROPN1L; ropporin-1-like protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.