Gene detail

Detailed information of g1378.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047143338.1, signal recognition particle subunit SRP68-like [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q00004	Signal recognition particle subunit SRP68 OS=Canis lupus familiaris OX=9615 GN=SRP68 PE=1 SV=1
Q8BMA6	Signal recognition particle subunit SRP68 OS=Mus musculus OX=10090 GN=Srp68 PE=1 SV=2
Q9UHB9	Signal recognition particle subunit SRP68 OS=Homo sapiens OX=9606 GN=SRP68 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000110 (this species only)
Orthogroup (gene family)	OG0000143 (this species only)
Orthogroup (gene family)	OG0000546 (this species only)
Orthogroup (gene family)	OG0001124 (this species only)
Orthogroup (gene family)	OG0001130 (this species only)
Orthogroup (gene family)	OG0001845 (this species only)
Orthogroup (gene family)	OG0002889 (this species only)
Orthogroup (gene family)	OG0005393 (this species only)
Orthogroup (gene family)	OG0005577 (this species only)
Orthogroup (gene family)	OG0006384 (this species only)
Orthogroup (gene family)	OG0006731 (this species only)
Orthogroup (gene family)	OG0008886 (this species only)
Orthogroup (gene family)	OG0029706 (this species only)
Orthogroup (gene family)	OG0173456 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF00433 all species →	Pkinase_C	Protein kinase C terminal domain	Family	Interproscan
PF20520 all species →	Ac45-VOA1_TM	V0 complex accessory subunit Ac45/VOA1 transmembrane domain	Domain	Interproscan
PF05827 all species →	VAS1_LD	V-type proton ATPase subunit S1, luminal domain	Domain	Interproscan
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF12423 all species →	KIF1B	Kinesin protein 1B	Family	Interproscan
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan
PF13271 all species →	DUF4062	Domain of unknown function (DUF4062)	Family	Interproscan
PF05063 all species →	MT-A70	MT-A70	Family	Interproscan
PF09588 all species →	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan
PF05649 all species →	Peptidase_M13_N	Peptidase family M13	Family	Interproscan
PF16969 all species →	SRP68	RNA-binding signal recognition particle 68	Family	Interproscan
PF01459 all species →	Porin_3	Eukaryotic porin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR000961 all species →	Domain	AGC-kinase, C-terminal	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050236 all species →	Family	Serine/threonine-protein kinases, AGC	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR017892 all species →	Domain	Protein kinase, C-terminal	Interproscan
IPR046756 all species →	Domain	V-type proton ATPase subunit S1/VOA1, transmembrane domain	Interproscan
IPR008388 all species →	Family	V0 complex accessory subunit Ac45	Interproscan
IPR046755 all species →	Domain	V-type proton ATPase subunit S1, luminal domain	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR022140 all species →	Domain	Kinesin-like KIF1-type	Interproscan
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR050302 all species →	Family	Rab GTPase-activating TBC domain-containing protein	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR051191 all species →	Family	DDB1-CUL4-associated factor 12	Interproscan
IPR025139 all species →	Domain	Domain of unknown function DUF4062	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR007757 all species →	Family	MT-A70-like	Interproscan
IPR045123 all species →	Family	N6-adenosine-methyltransferase non-catalytic subunit METTL14-like	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR011604 all species →	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR051703 all species →	Family	NF-kappa-B Signaling Regulator	Interproscan
IPR019080 all species →	Domain	YqaJ viral recombinase	Interproscan
IPR042089 all species →	Homologous_superfamily	Peptidase M13, domain 2	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR000718 all species →	Family	Peptidase M13	Interproscan
IPR008753 all species →	Domain	Peptidase M13, N-terminal domain	Interproscan
IPR026258 all species →	Family	Signal recognition particle subunit SRP68	Interproscan
IPR034652 all species →	Domain	Signal recognition particle subunit SRP68, RNA-binding domain	Interproscan
IPR038253 all species →	Homologous_superfamily	SRP68, N-terminal domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR037930 all species →	Family	Tom40	Interproscan
IPR023614 all species →	Homologous_superfamily	Porin domain superfamily	Interproscan
IPR027246 all species →	Family	Eukaryotic porin/Tom40	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24356 all species →	SERINE/THREONINE-PROTEIN KINASE	Interproscan
PTHR12471 all species →	VACUOLAR ATP SYNTHASE SUBUNIT S1	Interproscan
PTHR47117 all species →	STAR-RELATED LIPID TRANSFER PROTEIN 9	Interproscan
PTHR47219 all species →	RAB GTPASE-ACTIVATING PROTEIN 1-LIKE	Interproscan
PTHR19860 all species →	DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED	Interproscan
PTHR13107 all species →	N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT	Interproscan
PTHR46609 all species →	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR11733 all species →	ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED	Interproscan
PTHR12860 all species →	SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN	Interproscan
PTHR15722 all species →	IFT140/172-RELATED	Interproscan
PTHR10802 all species →	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0036396 all species →	Cellular Component	RNA N6-methyladenosine methyltransferase complex	Interproscan
GO:0080009 all species →	Biological Process	obsolete mRNA methylation	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016485 all species →	Biological Process	protein processing	Interproscan
GO:0005047 all species →	Molecular Function	signal recognition particle binding	Interproscan
GO:0005786 all species →	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0006614 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312 all species →	Molecular Function	7S RNA binding	Interproscan
GO:0030942 all species →	Molecular Function	endoplasmic reticulum signal peptide binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan
GO:0005741 all species →	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0008320 all species →	Molecular Function	protein transmembrane transporter activity	Interproscan
GO:0030150 all species →	Biological Process	protein import into mitochondrial matrix	Interproscan
GO:0005742 all species →	Cellular Component	mitochondrial outer membrane translocase complex	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03107	SRP68; signal recognition particle subunit SRP68	-	Secretion system	ko02044	deepkoala
K11518	TOM40; mitochondrial import receptor subunit TOM40	-	Transporters	ko02000	deepkoala
K23691	PKN2; serine/threonine-protein kinase N2	EC:2.7.11.13	Protein kinases	ko01001	deepkoala
K23960	METTL14; mRNA m6A methyltransferase non-catalytic subunit	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.