Detailed information of g1385.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_012275921.1, cyclin-dependent kinases regulatory subunit [Orussus abietinus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P41384Cyclin-dependent kinases regulatory subunit OS=Patella vulgata OX=6465 PE=3 SV=1
Q24152Cyclin-dependent kinases regulatory subunit OS=Drosophila melanogaster OX=7227 GN=Cks30A PE=3 SV=1
Q91879Cyclin-dependent kinases regulatory subunit 2 OS=Xenopus laevis OX=8355 GN=cks2 PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilyMYB
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01483P_proproteinProprotein convertase P-domainFamilyInterproscan
PF00579tRNA-synt_1btRNA synthetases class I (W and Y)FamilyInterproscan
PF20878REST_helicalHelical region in REST corepressorFamilyInterproscan
PF00249Myb_DNA-bindingMyb-like DNA-binding domainDomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF01363FYVEFYVE zinc fingerDomainInterproscan
PF17927Ins134_P3_kin_NInositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domainDomainInterproscan
PF05770Ins134_P3_kinInositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domainDomainInterproscan
PF14837INTS5_NIntegrator complex subunit 5 N-terminusFamilyInterproscan
PF01111CKSCyclin-dependent kinase regulatory subunitDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR002884DomainP domainInterproscan
IPR014729Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR050489FamilyTyrosine--tRNA ligaseInterproscan
IPR002305FamilyAminoacyl-tRNA synthetase, class IcInterproscan
IPR017884DomainSANT domainInterproscan
IPR049048DomainREST corepressor, helical domainInterproscan
IPR051066FamilyTranscriptional Regulator and CorepressorInterproscan
IPR001005DomainSANT/Myb domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR051858FamilyWD repeat-containing GAD-1Interproscan
IPR001680RepeatWD40 repeatInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR042234FamilyWD repeat and FYVE domain-containing protein 1/2Interproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR000306DomainFYVE zinc fingerInterproscan
IPR017455DomainZinc finger, FYVE-relatedInterproscan
IPR008656FamilyInositol-tetrakisphosphate 1-kinaseInterproscan
IPR011761DomainATP-grasp foldInterproscan
IPR041429DomainInositol-tetrakisphosphate 1-kinase, N-terminalInterproscan
IPR040464DomainInositol 1,3,4-trisphosphate 5/6-kinase, ATP-grasp domainInterproscan
IPR029445DomainIntegrator complex subunit 5, N-terminalInterproscan
IPR040316FamilyIntegrator complex subunit 5Interproscan
IPR036858Homologous_superfamilyCyclin-dependent kinase, regulatory subunit superfamilyInterproscan
IPR000789FamilyCyclin-dependent kinase, regulatory subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46264TYROSINE-TRNA LIGASEInterproscan
PTHR16089REST COREPRESSOR COREST PROTEIN-RELATEDInterproscan
PTHR47501TRANSPOSASE-RELATEDInterproscan
PTHR16017GASTRULATION DEFECTIVE PROTEIN 1-RELATEDInterproscan
PTHR46189LD41958PInterproscan
PTHR14217INOSITOL-TETRAKISPHOSPHATE 1-KINASEInterproscan
PTHR31697INTEGRATOR COMPLEX SUBUNIT 5Interproscan
PTHR23415CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004252Molecular Functionserine-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0004831Molecular Functiontyrosine-tRNA ligase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006437Biological Processtyrosyl-tRNA aminoacylationInterproscan
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0004812Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006418Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0000118Cellular Componenthistone deacetylase complexInterproscan
GO:0003714Molecular Functiontranscription corepressor activityInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0045892Biological Processnegative regulation of DNA-templated transcriptionInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0035861Cellular Componentsite of double-strand breakInterproscan
GO:0005769Cellular Componentearly endosomeInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0000287Molecular Functionmagnesium ion bindingInterproscan
GO:0032957Biological Processinositol trisphosphate metabolic processInterproscan
GO:0047325Molecular Functioninositol-3,4,5,6-tetrakisphosphate 1-kinase activityInterproscan
GO:0052725Molecular Functioninositol-1,3,4-trisphosphate 6-kinase activityInterproscan
GO:0052726Molecular Functioninositol-1,3,4-trisphosphate 5-kinase activityInterproscan
GO:0052746Biological Processobsolete inositol phosphorylationInterproscan
GO:0032039Cellular Componentintegrator complexInterproscan
GO:0034472Biological ProcesssnRNA 3'-end processingInterproscan
GO:0016538Molecular Functioncyclin-dependent protein serine/threonine kinase regulator activityInterproscan
GO:0000307Cellular Componentcyclin-dependent protein kinase holoenzyme complexInterproscan
GO:0007346Biological Processregulation of mitotic cell cycleInterproscan
GO:0019005Cellular ComponentSCF ubiquitin ligase complexInterproscan
GO:0019901Molecular Functionprotein kinase bindingInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0043130Molecular Functionubiquitin bindingInterproscan
GO:0061575Molecular Functioncyclin-dependent protein serine/threonine kinase activator activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13193RBM27; RNA-binding protein 27-Small cell lung cancerko05222deepkoala
Phosphatidylinositol signaling systemko04070deepkoala
Membrane traffickingko04131deepkoala
Spliceosomeko03041deepkoala

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