Gene detail

Detailed information of g13877.t1 in Montipora capitata

Genomic Location: Sc0000491:223178...250234
NR annotation: XP_044163784.1, asparagine--tRNA ligase, cytoplasmic-like isoform X1 [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g13877.t1

atgtataatccccttagctgtctaggcaatggtccagtgatctacacctcagaaaaggaaggaagtgatgaatcaggggatgggtcattgcagaagccattcaaaactgtgatgcgggccctttttgttactgaaaatgaagaagcaccacctcagattatggttgatggtaaagatgaaggagagaggtatgaaaagcttgccaaggcacagttgaagaaggtcacaaagttgtatgcacaagaaaaaaagaagtctgaagaacgagagaaaaaagaggctgaaaaagctcagcagagggaaaagaatcttgaggaagccaagaaaataacaatcaaagaagatgagactttgccaccagcaaagaggataaggataagagagtctgtcacccatcgtgatcagagattgaaggtctttggctgggttcatagacttaggcgacagggcaaaaacctgatgtttattgtacttagagatggaactggatttctacagtgtgtcttatctgatcagttgtgtcagacctatgaggctgttacgttgtccaccgaagcatctgtgtgtctttatggtgtcatcaaagagctccctgagggcaaaacagctcctggaggccatgaaatggctgtggacttctgggaactggttggagaatcccccgctggtggattggataacttggtgaatgaggaatctgccattgacactcaacttgacaacaggcacataatgctcagaggtgatacggtgtcaagaatcctaagaatgcgctccacagtaacgcagtgctttagagatcattatttcagccgtggttatgttgaggttactcccccaactatggttcaaacgcaagttgaaggaggttctacgctctttgaatttagctactttggtgaaaaggcatatttgacacagtcatcccaactttacctggaaacagttataccatcccttggtgatgtattctgtatagcacagtcatatagagcggagcagtcacgcacaagaaggcatctgtcagaatacactcatgttgaagcagaatgccctttcataagttttgatgatcttctggacagagtagaggacttggtttgtgatgttgttgatagagtgttaaagtctcccaatgcagaagtactgaaagaattgaatccaaatttcaagcccccaaaaaggcctttcaagagaatgaattatgctgatgctattgtgtatctaaaagagaataaaatcacgaaggaagatggcacgttttatgaatttggagagtggtcaggagaacgcggtcaaaatattctcgacaaggtgacgttttccgaagcggatctcaagaattgggaaaagcacctcgaaaaattggaggagcactgcaaaccgaggggaagcaaactcgtcgcggctactcaatacaaggtgttaacgcaaggagatatggaactacctgaatatatcgaaaagtgcagacaaattaccgacgcatgtggatggccagagagcgccaaagacatggctctccggaatgcaattctccttggactcaaaaatccaatggtgtatcggaaatgtttggaagagaaccaagacacactcacagcggacagggtcatcgagattgctacggacatctacaatagcgattgtcaaagatcgattatgcagactctcagcacagcatcggcagcagccacagccatacaacaagggtcaactcaagttcacaagctacaaggaaatcaccaagaagatggaaaatcagaaaaaggacacggaaaaaatttcacttcccaagacaaagatggaatgaagcgacaagactgttattgttgcggagcaaggccagctcatccaaagtctaagtgtccagccaaggatgtaatatgtcacaactgtggtaaaaaagggcattaccagaagtgttgcaaaagcaagagagcaaaaccaggcaagaacagaacgttcaaacaaactcaagtgcatgacttgcagacacaactagtggagggagatagccagcctccaatcaacccgtatccaggcccctacctgccgcttgaaccgctccagcagtgctcaagtcagccagtattgtttcaccgtattcagacgtatcatgttaagagcattaatgacactccaagcaagcatatcaagccactttggttgagtgcagcaagtgaaggaccgattcatcaagttgagtgtgagatcgacactggcgcgggatgcaatgtaatgcctttatacatgtacaaatcgctgtttggaaataacgaactgatgcctacttccgtgcaaatctacggatacggagaatctccgatagcaaatcttggagcgtgtataattaccatacacaccagaaataaacagccacagatggcaacctgtcaggtgacagacacccgaggataccttatcctaggtagaacaacagcgcagcaaattggttacattgacttcccagtggtaacaccacccgctttaacccgtgttccacaagtccatacgagtgtgaatgttttacgtccaaacttagatgaagttaaaacgcccatatgtgaaatgacaaatgatgcagttatcctgaatggaaagagacactgtttacctattacaaaggagtatgtattgtcagaatttaaagatgtgttcgaaggcattggtaaactgccaggagggaaataccacattgaactgaaacctgatgctcaacctgtacagcacccgcccagggcagtgcccgaaaagaagaaggagattactaaccctattccagccacagacaatcgcctggatagaaccagaattgccaccactgcggattcaactctgaatcagctacgacattatatcttccacggttggccacttcagaagtgtcaacttccacaaccagtacagcattactggaattatcgtgaagagctagcaatagaagacggactgatattcaaagctcatcgcttagtgattcccatatcgcagagagcagaatatctgaaagatcttcatgcaggaaacttaggagaggagaaaactctactaagagcacgcgagacagtgttttggccaggaatctctgatgacatcagaaatgctgtgaaagcatgtgacatttgccagaaacacaagccagctcaacagaaggagcccctcacgccgcatgacgtacctagcatgccatgggtcaagctcggaatcgacctatttgaacaccgttcccaccactacctactggttgcagattatttcagcaaatttcctattgtgaagaaactgtctaatcagacgtcaggtcacgtgattggtctccttaagacaatctttgcggaatatgggattccaacaatagtgtacacagatcaaggaactcaatttgcatccgaggagttcagagcattcgctgctcagtacaggttccaggtgcagcactcaagccctaggtacccccagtcaaatggtttcattgaagccatggtcaaaacggctaagaacatcatggaaaaggcagaagagtcaggttctgatccacatcttgcaatgttgatctaccgatccacaccaatcagacccggtcaactaagcccagcagaactgctcactcagcgcaagtatagagcactcctgcccattcaccaatatctacatcctaatctggagaagagcagagaagcgcaaatagcacagaaacagacccaggcggattattacaatcagaaagccaagcagcttcaggatctacagcaataccagaatgttcgattacaactagatcctaatagaccaatatggcagaaagccacagtggttcaacaacccaccgataggtcacccagacgttatcaagtgcagaccgaatctggagcgagatatttcagaaaccgtcgacacttgcgtcctgcaattcagagcgaccaaccagaagatctaatagggcaacctgccacttcagcagaatcacctgcgccaacatcaccacacacaaatactgttaatcagaccttgtcgacgcagtgtgtacaggaccacacccatcccagtattgcagcctctagaccacgacgaactgttagaccaccaaagagactgatcgaagaagtgtag

Transcript

g13877.t1

ATGTATAATCCCCTTAGCTGTCTAGGCAATGGTCCAGTGATCTACACCTCAGAAAAGGAAGGAAGTGATGAATCAGGGGATGGGTCATTGCAGAAGCCATTCAAAACTGTGATGCGGGCcctttttgttactgaaaatgAAGAAGCACCACCTCAGATTATGGTTGATGGTAAAGATGAAGGAGAGAGGTATGAAAAGCTTGCCAAGGCACAGTTGAAGAAGGTCACAAAGTTGTATgcacaagaaaaaaagaagtctGAAGAACGAGAGAAAAAAGAGGCTGAAAAAGCTCAGCAGAGGGAAAAGAATCTTGAGGAAGCCAAGAAAATAACAATCAAAGAAGATGAGACTTTGCCACCAGCAAAGAGGATAAGGATAAGAGAGTCTGTCACCCATCGTGATCAGAGATTGAAGGTCTTTGGCTGGGTTCATAGACTTAGGCGACAGGGCAAAAACCTGATGTTTATTGTACTTAGAGATGGAACTGGATTTCTACAGTGTGTCTTATCTGATCAGTTGTGTCAGACCTATGAGGCTGTTACGTTGTCCACCGAAGCATCTGTGTGTCTTTATGGTGTCATCAAAGAGCTCCCTGAGGGCAAAACAGCTCCTGGAGGCCATGAAATGGCTGTGGACTTCTGGGAACTGGTTGGAGAATCCCCCGCTGGTGGATTGGATAACTTGGTGAATGAGGAATCTGCCATTGACACTCAACTTGACAACAGGCACATAATGCTCAGAGGTGATACGGTGTCAAGAATCCTAAGAATGCGCTCCACAGTAACGCAGtgCTTTAGAGATCATTATTTCAGCCGTGGTTATGTTGAGGTTACTCCCCCAACTATGGTTCAAACGCAAGTTGAAGGAGGTTCTACGCTCTTTGAATTTAGCTACTTTGGTGAAAAGGCATATTTGACACAGTCATCCCAACTTTACCTGGAAACAGTTATACCATCCCTTGGTGATGTATTCTGTATAGCACAGTCATATAGAGCGGAGCAGTCACGCACAAGAAGGCATCTGTCAGAATACACTCATGTTGAAGCAGAATGCCCTTTCATAAGTTTTGATGATCTTCTGGACAGAGTAGAGGACTTGGTTTGTGATGTTGTTGATAGAGTGTTAAAGTCTCCCAATGCAGAAGTACTGAAAGAATTGAATCCAaatttcaAGCCCCCAAAAAGGCCTTTCAAGAGAATGAATTATGCTGATGCTATTGTGTATCTAAAAGAGAATAAAATCACGAAGGAAGATGGCACGTTTTATGAATTTGGAGAGTGGTCAGGAGAACGCGGTCAAAATATTCTCGACAAGGTGACGTTTTCCGAAGCGGATCTCAAGAATTGGGAAAAGCACCTCGAAAAATTGGAGGAGCACTGCAAACCGAGGGGAAGCAAACTCGTCGCGGCTACTCAATACAAGGTGTTAACGCAAGGAGATATGGAACTACCTGAATATATCGAAAAGTGCAGACAAATTACCGACGCATGTGGATGGCCAGAGAGCGCCAAAGACATGGCTCTCCGGAATGCAATTCTCCTTGGACTCAAAAATCCAATGGTGTATCGGAAATGTTTGGAAGAGAACCAAGACACACTCACAGCGGACAGGGTCATCGAGATTGCTACGGACATCTACAATAGCGATTGTCAAAGATCGATTATGCAGACTCTCAGCACAGCATCGGCAGCAGCCACAGCCATACAACAAGGGTCAactcaagttcacaagctacaAGGAAATCACCAAGAAGATGGAAAATCAGAAAAAGGACACGGAAAAAATTTCACTTCCCAAGACAAAGATGGAATGAAGCGACAAGACTGTTATTGTTGCGGAGCAAGGCCAGCTCATCCAAAGTCTAAGTGTCCAGCCAAGGATGTAATATGTCACAACTGTGGTAAAAAAGGGCATTACCAGAAGTGTTGCAAAAGCAAGAGAGCAAAACCAGGCAAGAACAGAACGTTCAAACAAACTCAAGTGCATGACTTGCAGACACAACTAGTGGAGGGAGATAGCCAGCCTCCAATCAACCCGTATCCAGGCCCCTACCTGCCGCTTGAACCGCTCCAGCAGTGCTCAAGTCAGCCAGTATTGTTTCACCGTATTCAGACGTATCATGTTAAGAGCATTAATGACACTCCAAGCAAGCATATCAAGCCACTTTGGTTGAGTGCAGCAAGTGAAGGACCGATTCATCAAGTTGAGTGTGAGATCGACACTGGCGCGGGATGCAATGTAATGcctttatacatgtacaaatcGCTGTTTGGAAATAACGAACTGATGCCTACTTCCGTGCAAATCTACGGATACGGAGAATCTCCGATAGCAAATCTTGGAGCGTGTATAATTACCATACACACCAGAAATAAACAGCCACAGATGGCAACCTGTCAGGTGACAGACACCCGAGGATACCTTATCCTAGGTAGAACAACAGCGCAGCAAATTGGTTACATTGACTTCCCAGTGGTAACACCACCCGCTTTAACCCGTGTTCCACAAGTCCATACGAGTGTGAATGTTTTACGTCCAAACTTAGATGAAGTTAAAACGCCCATATGTGAAATGACAAATGATGCAGTTATCCTGAATGGAAAGAGACACTGTTTACCTATTACAAAGGAGTATGTATTGTCAGAATTTAAAGATGTGTTCGAAGGCATTGGTAAACTGCCAGGAGGGAAATACCACATTGAACTGAAACCTGATGCTCAACCTGTACAGCACCCGCCCAGGGCAGTGCCCGAAAAGAAGAAGGAGATTACTAACCCTATTCCAGCCACAGACAATCGCCTGGATAGAACCAGAATTGCCACCACTGCGGATTCAACTCTGAATCAGCTACGACATTATATCTTCCACGGTTGGCCACTTCAGAAGTGTCAACTTCCACAACCAGTACAGCATTACTGGAATTATCGTGAAGAGCTAGCAATAGAAGACGGACTGATATTCAAAGCTCATCGCTTAGTGATTCCCATATCGCAGAGAGCAGAATATCTGAAAGATCTTCATGCAGGAAACTTaggagaggagaaaactctACTAAGAGCACGCGAGACAGTGTTTTGGCCAGGAATCTCTGATGACATCAGAAATGCTGTGAAAGCATGTGACATTTGCCAGAAACACAAGCCAGCTCAACAGAAGGAGCCCCTCACGCCGCATGACGTACCTAGCATGCCATGGGTCAAGCTCGGAATCGACCTATTTGAACACCGTTCCCACCACTACCTACTGGTTGCAGATTATTTCAGCAAATTTCCTATTGTGAAGAAACTGTCTAATCAGACGTCAGGTCACGTGATTGGTCTCCTTAAGACAATCTTTGCGGAATATGGGATTCCAACAATAGTGTACACAGATCAAGGAACTCAATTTGCATCCGAGGAGTTCAGAGCATTCGCTGCTCAGTACAGGTTCCAGGTGCAGCACTCAAGCCCTAGGTACCCCCAGTCAAATGGTTTCATTGAAGCCATGGTCAAAACGGCTAAGAACATCATGGAAAAGGCAGAAGAGTCAGGTTCTGATCCACATCTTGCAATGTTGATCTACCGATCCACACCAATCAGACCCGGTCAACTAAGCCCAGCAGAACTGCTCACTCAGCGCAAGTATAGAGCACTCCTGCCCATTCACCAATATCTACATCCTAATCTGGAGAAGAGCAGAGAAGCGCAAATAGCACAGAAACAGACCCAGGCGGATTATTACAATCAGAAAGCCAAGCAGCTTCAGGATCTACAGCAATACCAGAATGTTCGATTACAACTAGATCCTAATAGACCAATATGGCAGAAAGCCACAGTGGTTCAACAACCCACCGATAGGTCACCCAGACGTTATCAAGTGCAGACCGAATCTGGAGCGAGATATTTCAGAAACCGTCGACACTTGCGTCCTGCAATTCAGAGCGACCAACCAGAAGATCTAATAGGGCAACCTGCCACTTCAGCAGAATCACCTGCGCCAACATCACCACACACAAATACTGTTAATCAGACCTTGTCGACGCAGTGTGTACAGGACCACACCCATCCCAGTATTGCAGCCTCTAGACCACGACGAACTGTTAGACCACCAAAGAGACTGATCGAAGAAGTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KJG3	Asparagine--tRNA ligase, cytoplasmic OS=Bos taurus OX=9913 GN=NARS PE=2 SV=3
O43776	Asparagine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=NARS1 PE=1 SV=1
Q4R4Z1	Asparagine--tRNA ligase, cytoplasmic OS=Macaca fascicularis OX=9541 GN=NARS1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002634 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00152 all species →	tRNA-synt_2	tRNA synthetases class II (D, K and N)	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF01336 all species →	tRNA_anti-codon	OB-fold nucleic acid binding domain	Domain	Interproscan
PF20917 all species →	AsnRS_N	Asparaginal-tRNA synthetase, N-terminal domain	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004364 all species →	Domain	Aminoacyl-tRNA synthetase, class II (D/K/N)	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR004365 all species →	Domain	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR048952 all species →	Domain	Asparagine--tRNA ligase, N-terminal domain	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g13877.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.