Gene detail

Detailed information of g1393.t1 in Acropora digitifera

Genomic Location: chr1Alt:22555056...22558760
NR annotation: XP_015760503.1, PREDICTED: uncharacterized protein LOC107339720 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g1393.t1

ATGAACGAATCCTCTTCGAAGCGAGCGAAACAACAGACATTGAAGACTTCTTTTAAGTGCAAAACTCCAGCACACGAAGAGAAAGTGAAAGTCTGCCATGAGTGGATAAGGGCGTGTGCTGCTGCAAACATACCGCTAAACAAATCAGAAAATCCTGTAATGCGTGATTTTCTTCTCTCCCGTGTAGTCAATGGTGGTGCGATCCCTAAGGGCACACAGCTTCGGGACCACTTATTAGATGTTTATGAGTTGGAAAAGGAAGAACTTAAGCAGAAAATAAAAGAGGCAAATGTCGCTATCATGATAGACGAGCTTTGCGACGATAATGGTCGTTGTATAATAGACGTTATGGCGACAATTCTGGACTTTGACGAGCTTTCTCCCAGTAACGGAAACATTGCCTACCTGTTAGATACGCACTTTGTGACAGAAACAAATAACAAAACTGTGTCCCAAGCAGTTGTTAAGACTATCAATGACTATGGAATAGACTTTGATCGTGTCCTGATTTTTAATACTGACAATGCTACTTACATGAAAAAGGCTTTCAGAGAAACTCTTTCATGTTTGTTCTCGAGTTGTGTCCATATCACCTGCCACAGCCACATCATAAGTCTAGTGGCTGGTGATTTTAAGCGACATTTCAGCTTTGTCACAGAGTTCGCCAAGTGCATGAGGAATTTATTTTTTATTCCAAGTGGACGCAAAGCTCGTTTCCTGAAATACATGAATGACTGTGCGGGTGATCTCCAGGGCAAAGCTACTATGCCTCCCAATCCATCAACGAAGGGTCAGCATGGTTTGACTCAGCTGTGTACCACGCGAAGCACTTTAACGTCTATGAGGATTTCATCACCCAAGAGATTCAACGATAGAATCCCTCATGTAACACAGTCACACAACAAAATGGAGAGTCTCCTATGCATCCTTCACTCGAATTCTTCATTAAGTGAAGACAAGTTGGACTTCTGCTTCCAAGGCACATCGATGTCATTTACCAGCGACGAGAAGTCTGATGTTGCTCACACTGTCAGATCAGCATTCTCCGACGCTTACCAGAAACTAAAGAAGTACACAGATGAGGGCAGGGGACAGCCTGGCAGTACTTTCCTACGTGATGTCAGAATACTAGATCCCCGCAATCTTGTGAGTTTGGATACGACCCTCACACCCAACAGCATCCCAGGAATTGAAGACGTGCCCCAAACAGAGATGGATTTGTATGCCCATGCTATTGGCCCTGCAGCGGTGAAAAGAAGCACAAATGGAAAGCTAGACATTAAGCTGTTTTGGAAGTCGAATGCCAGTGAACTCCCCAACCTGTACAAAGTAGCCTCAATCTACTGCACAGCAACACTGGGTTCTTATGATGTGGAGCGCTGTTTTTCGACTTACAACAACGTTCTCACCGGGAAGCGAATGTCAATGACGCCAAGTACCCTCAAGGCATACCATTTCCTGAATTGGAATCTGCAAGTTAATTCTACAGTTAGAGAAGAGGTGGTTTCCGAAGGAACTCCAATTACTCCACTTGCTTGTGACTCACTTACAAAGTCGATCAACAAAGACCCAAGACCAAAGAGTCCAATTCCTACAGATTCTACTGTCTCTGTTCCTACGTTCAGCAGTCCAGCAGCCCCGCCTATCAAATTCCCGTCTGGGTCTTCCAGCAGTTCAATGCATACATCAAACAAGTCAGTAGCCAGTCCAGGTGACCAAGTTCATTCCTTGCCAATGTCTGGTTTTTTCAAACCAGCTACCAAGTTATCAAGAGAGGCCGATCCATCATGGAAACCGCCAAACAATCCCAATACCACCCATAAACGGAAAGGGGTACCTGCGAAAGGCAGTGCGGGGAAACGGTTTCGTTCAAACCTGGGGAAATTCGCGAACCCCATAAAACCTATGAAAGTTAAGACTTCCTCGCCAGTTCCCTTATCCGTGAAGGTCCCATCACCAAACAATCCTCAAATACAGTGTGGCCTTGACAAGAATACGTCAGCTAAATTTGAGAAAACAGAAGCCAATGAATTTCCAGCCCACCTAAATGCAATAGTCAATGCAATGGTTGATGGTTCAGTAAAGTTTGGAGGAAGCCGACTTATTGCTAATAATGATTTGAGTTCTCTCCGTGGTGGCCATCAGAAGGACGACGACAATTACTTGAGTAATTTTGTTATTGATTCATACCTAAAAGTTCTCGCCGAAACAGCTACGTGTGATGCAGAAACCATAGAGTGGGAAGTTTTCGAGAAAGGGATCGGCAGTCAGCCTGCTGTGGATCTCCTTGGAGCTAAAGCTGACCTCATGACGAAGGATTATGTCCTTGTTCCGTGTAACCCAATGATGAGCAGACACTGGTTTCTCCTTGCAGCTTTGCCTAAGCAAAAGCAGATGGTCATTATGGACAGCCTTCAAGGATTTTCTGTTAAGCCTACTCAAAAAGTTGCAGTGCGAAAGATGTGGAACAACGCTAACGGCCAGCTACCACAGCAGGAGAACAGATACGATTGCGGTGTCTATGTATGCATTTACGCACGATGCTTGCTAGGTTTGTCTGGTGCAGCGGTAAGCAGTGATAGCATCCCTTCCTTCCGTAAGCAGATGTTACTTGAGCTTCACAGGATGAAGGTTGAAGACAAGTTACAACCTCTACAAGAAGGGCAGTACTATGCAGTAGAATATCAGAGAGCATTCTACATTGGTCGCATCCTAAGGAACATGAATGCCACTCTGACAATAAAGTTCCTGCACTCAGTCGGAGCAAAAGTGTTCGACTGGCCCACACGTGACGACATTGATGACTGCTCCCCCTCCTGGCTAATCTCAGGTCCACTTGAAATCCAAGGAAGTGGTCCATTCCGATTTCCTCAGTTGGGTGAGGTAGAACACGTTTACCAGTACATAAAGAGGAGCAAGAGGAGATGA

Transcript

chr1Alt.g1393.t1

AAGTTCCGTGCAGATGACAATGTAATGTTGTTGTGGATCACCACCGGAAGTCATGTCTTGACAATCACCTTTCGGCTGTTTCACACATCAAGCGAATGAACGAATCCTCTTCGAAGCGAGCGAAACAACAGACATTGAAGACTTCTTTTAAGTGCAAAACTCCAGCACACGAAGAGAAAGTGAAAGTCTGCCATGAGTGGATAAGGGCGTGTGCTGCTGCAAACATACCGCTAAACAAATCAGAAAATCCTGTAATGCGTGATTTTCTTCTCTCCCGTGTAGTCAATGGTGGTGCGATCCCTAAGGGCACACAGCTTCGGGACCACTTATTAGATGTTTATGAGTTGGAAAAGGAAGAACTTAAGCAGAAAATAAAAGAGGCAAATGTCGCTATCATGATAGACGAGCTTTGCGACGATAATGGTCGTTGTATAATAGACGTTATGGCGACAATTCTGGACTTTGACGAGCTTTCTCCCAGTAACGGAAACATTGCCTACCTGTTAGATACGCACTTTGTGACAGAAACAAATAACAAAACTGTGTCCCAAGCAGTTGTTAAGACTATCAATGACTATGGAATAGACTTTGATCGTGTCCTGATTTTTAATACTGACAATGCTACTTACATGAAAAAGGCTTTCAGAGAAACTCTTTCATGTTTGTTCTCGAGTTGTGTCCATATCACCTGCCACAGCCACATCATAAGTCTAGTGGCTGGTGATTTTAAGCGACATTTCAGCTTTGTCACAGAGTTCGCCAAGTGCATGAGGAATTTATTTTTTATTCCAAGTGGACGCAAAGCTCGTTTCCTGAAATACATGAATGACTGTGCGGGTGATCTCCAGGGCAAAGCTACTATGCCTCCCAATCCATCAACGAAGGGTCAGCATGGTTTGACTCAGCTGTGTACCACGCGAAGCACTTTAACGTCTATGAGGATTTCATCACCCAAGAGATTCAACGATAGAATCCCTCATGTAACACAGTCACACAACAAAATGGAGAGTCTCCTATGCATCCTTCACTCGAATTCTTCATTAAGTGAAGACAAGTTGGACTTCTGCTTCCAAGGCACATCGATGTCATTTACCAGCGACGAGAAGTCTGATGTTGCTCACACTGTCAGATCAGCATTCTCCGACGCTTACCAGAAACTAAAGAAGTACACAGATGAGGGCAGGGGACAGCCTGGCAGTACTTTCCTACGTGATGTCAGAATACTAGATCCCCGCAATCTTGTGAGTTTGGATACGACCCTCACACCCAACAGCATCCCAGGAATTGAAGACGTGCCCCAAACAGAGATGGATTTGTATGCCCATGCTATTGGCCCTGCAGCGGTGAAAAGAAGCACAAATGGAAAGCTAGACATTAAGCTGTTTTGGAAGTCGAATGCCAGTGAACTCCCCAACCTGTACAAAGTAGCCTCAATCTACTGCACAGCAACACTGGGTTCTTATGATGTGGAGCGCTGTTTTTCGACTTACAACAACGTTCTCACCGGGAAGCGAATGTCAATGACGCCAAGTACCCTCAAGGCATACCATTTCCTGAATTGGAATCTGCAAGTTAATTCTACAGTTAGAGAAGAGGTGGTTTCCGAAGGAACTCCAATTACTCCACTTGCTTGTGACTCACTTACAAAGTCGATCAACAAAGACCCAAGACCAAAGAGTCCAATTCCTACAGATTCTACTGTCTCTGTTCCTACGTTCAGCAGTCCAGCAGCCCCGCCTATCAAATTCCCGTCTGGGTCTTCCAGCAGTTCAATGCATACATCAAACAAGTCAGTAGCCAGTCCAGGTGACCAAGTTCATTCCTTGCCAATGTCTGGTTTTTTCAAACCAGCTACCAAGTTATCAAGAGAGGCCGATCCATCATGGAAACCGCCAAACAATCCCAATACCACCCATAAACGGAAAGGGGTACCTGCGAAAGGCAGTGCGGGGAAACGGTTTCGTTCAAACCTGGGGAAATTCGCGAACCCCATAAAACCTATGAAAGTTAAGACTTCCTCGCCAGTTCCCTTATCCGTGAAGGTCCCATCACCAAACAATCCTCAAATACAGTGTGGCCTTGACAAGAATACGTCAGCTAAATTTGAGAAAACAGAAGCCAATGAATTTCCAGCCCACCTAAATGCAATAGTCAATGCAATGGTTGATGGTTCAGTAAAGTTTGGAGGAAGCCGACTTATTGCTAATAATGATTTGAGTTCTCTCCGTGGTGGCCATCAGAAGGACGACGACAATTACTTGAGTAATTTTGTTATTGATTCATACCTAAAAGTTCTCGCCGAAACAGCTACGTGTGATGCAGAAACCATAGAGTGGGAAGTTTTCGAGAAAGGGATCGGCAGTCAGCCTGCTGTGGATCTCCTTGGAGCTAAAGCTGACCTCATGACGAAGGATTATGTCCTTGTTCCGTGTAACCCAATGATGAGCAGACACTGGTTTCTCCTTGCAGCTTTGCCTAAGCAAAAGCAGATGGTCATTATGGACAGCCTTCAAGGATTTTCTGTTAAGCCTACTCAAAAAGTTGCAGTGCGAAAGATGTGGAACAACGCTAACGGCCAGCTACCACAGCAGGAGAACAGATACGATTGCGGTGTCTATGTATGCATTTACGCACGATGCTTGCTAGGTTTGTCTGGTGCAGCGGTAAGCAGTGATAGCATCCCTTCCTTCCGTAAGCAGATGTTACTTGAGCTTCACAGGATGAAGGTTGAAGACAAGTTACAACCTCTACAAGAAGGGCAGTACTATGCAGTAGAATATCAGAGAGCATTCTACATTGGTCGCATCCTAAGGAACATGAATGCCACTCTGACAATAAAGTTCCTGCACTCAGTCGGAGCAAAAGTGTTCGACTGGCCCACACGTGACGACATTGATGACTGCTCCCCCTCCTGGCTAATCTCAGGTCCACTTGAAATCCAAGGAAGTGGTCCATTCCGATTTCCTCAGTTGGGTGAGGTAGAACACGTTTACCAGTACATAAAGAGGAGCAAGAGGAGATGAACATTGAACTCTTATTACGTCAAAGCAAATGTATACAGATGGTCTATAAGTGCATATTAGTGAGCTTTAGATTTTATGAGGGAGAATTCTTTTGAATTCCATGTCAGTCTGGTCAATAGAGCTTTTGCTTCTTTGTGCTGCTACCCAACATGTAAGAAGGGACGAAAACTACATTTGGTGTAATAAATCGTTGTTGCTCAT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Ubiquitin family	DUB\|ULP\|ULP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02902 all species →	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR003653 all species →	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR033375 all species →	Family	CGG triplet repeat-binding protein 1	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32344 all species →	U1-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g1393.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.